Cucsa.248920 (Cucumis sativus)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Cucsa.248920 T324101_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.248920.1 Sigma 70 203 273

Links

Other Sigma 70 family TFs
Other Cucumis sativus TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.718
SIGD Arabidopsis thaliana AT5G13730 N 0.718
Bo2g011520 Brassica oleracea Bo2g011520 N 0.718
Bo9g166510 Brassica oleracea Bo9g166510 N 0.718
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.718
Bra008807 Brassica rapa Bra008807 N 0.718
Bra023430 Brassica rapa Bra023430 N 0.718
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.718
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.718
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.704
Ca_22857 Cicer arietinum Ca_22857 N 0.732
Cla017559 Citrullus lanatus Cla017559 N 0.986
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.704
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.718
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.746
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.704
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.704
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.704
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.718
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.718