RO3G_10453 (Rhizopus oryzae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 RO3G_10453 T326109_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.447 0.338
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.447 0.338
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RO3T_10452 Sox 1 65

Links

Other Sox family TFs
Other Rhizopus oryzae TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I
Aquca_023_00151 Aquilegia coerulea Aquca_023_00151 I
DPBF3 Arabidopsis thaliana AT3G56850 D
BGIOSGA000613 Oryza indica BGIOSGA000613 I
BGIOSGA010835 Oryza indica BGIOSGA010835 I
BGIOSGA020087 Oryza indica BGIOSGA020087 I
Bo4g112690 Brassica oleracea Bo4g112690 I
Bo6g072380 Brassica oleracea Bo6g072380 I
Bo8g091160 Brassica oleracea Bo8g091160 I
Bostr.20505s0068 Boechera stricta Bostr.20505s0068 I
Bra003253 Brassica rapa Bra003253 I
Bra007274 Brassica rapa Bra007274 I
Bra007276 Brassica rapa Bra007276 I
Bra014668 Brassica rapa Bra014668 I
BRADI2G21820 Brachypodium distachyon BRADI2G21820 I
BRADI2G53060 Brachypodium distachyon BRADI2G53060 I
BRADI4G43850 Brachypodium distachyon BRADI4G43850 I
Cagra.0578s0014 Capsella grandiflora Cagra.0578s0014 I
Carubv10018770m.g Capsella rubella Carubv10018770m.g I
cassava22423.valid.m1 Manihot esculenta cassava22423.valid.m1 I
Ca_04375 Cicer arietinum Ca_04375 N
Ca_23748 Cicer arietinum Ca_23748 I
chr4.CM0337.330.nc Lotus japonicus chr4.CM0337.330.nc I
chr5.CM0052.120.nc Lotus japonicus chr5.CM0052.120.nc N
chr6.CM0314.840.nd Lotus japonicus chr6.CM0314.840.nd N
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I
Ciclev10002059m.g Citrus clementina Ciclev10002059m.g I
Cla000389 Citrullus lanatus Cla000389 I
Cla013878 Citrullus lanatus Cla013878 I
Cucsa.184670 Cucumis sativus Cucsa.184670 I
Cucsa.363740 Cucumis sativus Cucsa.363740 I
Cucsa.364380 Cucumis sativus Cucsa.364380 I
Eucgr.G00615 Eucalyptus grandis Eucgr.G00615 I
Eucgr.J00320 Eucalyptus grandis Eucgr.J00320 I
Eucgr.K01706 Eucalyptus grandis Eucgr.K01706 I
evm.TU.supercontig_21.207 Carica papaya evm.TU.supercontig_21.207 N
evm.TU.supercontig_33.182 Carica papaya evm.TU.supercontig_33.182 I
F775_17024 Aegilops tauschii F775_17024 I
F775_28711 Aegilops tauschii F775_28711 I
F775_31964 Aegilops tauschii F775_31964 I
gene00393-v1.0-hybrid Fragaria vesca gene00393-v1.0-hybrid I
gene11837-v1.0-hybrid Fragaria vesca gene11837-v1.0-hybrid N
GLYMA03G00580 Glycine max GLYMA03G00580 I
GLYMA05G25200 Glycine max GLYMA05G25200 I
GLYMA08G08220 Glycine max GLYMA08G08220 N
GLYMA08G19590 Glycine max GLYMA08G19590 N
GLYMA08G24340 Glycine max GLYMA08G24340 I
GLYMA15G05440 Glycine max GLYMA15G05440 N
GLYMA15G35080 Glycine max GLYMA15G35080 I
GLYMA19G30230 Glycine max GLYMA19G30230 I
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I
Gorai.005G078500 Gossypium raimondii Gorai.005G078500 N
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I
Gorai.009G301200 Gossypium raimondii Gorai.009G301200 I
Gorai.009G301400 Gossypium raimondii Gorai.009G301400 I
GRMZM2G161009 Zea mays GRMZM2G161009 I
GSMUA_Achr11G15610_001 Musa acuminata GSMUA_Achr11G15610_001 I
GSMUA_AchrUn_randomG12190_001 Musa acuminata GSMUA_AchrUn_randomG12190_001 I
LPERR01G30010 Leersia perrieri LPERR01G30010 I
LPERR05G16840 Leersia perrieri LPERR05G16840 I
Lus10008927.g Linum usitatissimum Lus10008927.g I
Lus10028889.g Linum usitatissimum Lus10028889.g I
MDP0000198495 Malus domestica MDP0000198495 I
MDP0000273211 Malus domestica MDP0000273211 I
MDP0000706379 Malus domestica MDP0000706379 I
mgf008848m Mimulus guttatus mgf008848m N
mgf009464m Mimulus guttatus mgf009464m N
mgf011003m Mimulus guttatus mgf011003m I
MLOC_16096 Hordeum vulgare MLOC_16096 I
MLOC_4554 Hordeum vulgare MLOC_4554 I
MLOC_6534 Hordeum vulgare MLOC_6534 I
MTR_4g094390 Medicago truncatula MTR_4g094390 I
MTR_7g088090 Medicago truncatula MTR_7g088090 I
OB01G43630 Oryza brachyantha OB01G43630 I
OB05G28440 Oryza brachyantha OB05G28440 I
OBART01G34790 Oryza barthii OBART01G34790 I
OBART05G21000 Oryza barthii OBART05G21000 I
OGLUM01G38810 Oryza glumaepatula OGLUM01G38810 I
OGLUM05G22240 Oryza glumaepatula OGLUM05G22240 I
OLONG_002030 Oryza longistaminata OLONG_002030 I
OLONG_003399 Oryza longistaminata OLONG_003399 I
OMERI01G32080 Oryza meridionalis OMERI01G32080 I
OMERI03G14020 Oryza meridionalis OMERI03G14020 I
OMERI05G18990 Oryza meridionalis OMERI05G18990 I
ONIVA01G39770 Oryza nivara ONIVA01G39770 I
ONIVA03G16560 Oryza nivara ONIVA03G16560 I
ONIVA05G21710 Oryza nivara ONIVA05G21710 I
OPUNC01G33790 Oryza punctata OPUNC01G33790 I
orange1.1g020697m.g Citrus sinensis orange1.1g020697m.g I
orange1.1g021146m.g Citrus sinensis orange1.1g021146m.g I
orange1.1g025985m.g Citrus sinensis orange1.1g025985m.g I
ORGLA01G0286100 Oryza glaberrima ORGLA01G0286100 I
ORUFI01G38120 Oryza rufipogon ORUFI01G38120 I
ORUFI05G22290 Oryza rufipogon ORUFI05G22290 I
OS01G0813100 Oryza sativa OS01G0813100 I
OS05G0489700 Oryza sativa OS05G0489700 I
Pavir.Eb03523 Panicum virgatum Pavir.Eb03523 I
Pavir.Ib01001 Panicum virgatum Pavir.Ib01001 I
Pavir.J05672 Panicum virgatum Pavir.J05672 I
Pavir.J34085 Panicum virgatum Pavir.J34085 I
Pavir.J38875 Panicum virgatum Pavir.J38875 I
PGSC0003DMG400023897 Solanum tuberosum PGSC0003DMG400023897 N
PGSC0003DMG400028121 Solanum tuberosum PGSC0003DMG400028121 I
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I
PK16522.1 Cannabis sativa PK16522.1 N
PK22350.1 Cannabis sativa PK22350.1 N
PK24978.1 Cannabis sativa PK24978.1 D
Pm004043 Prunus mume Pm004043 I
Pm016826 Prunus mume Pm016826 I
POPTR_0008s01130 Populus trichocarpa POPTR_0008s01130 I
POPTR_0010s25440 Populus trichocarpa POPTR_0010s25440 I
PRUPE_ppa008716mg Prunus persica PRUPE_ppa008716mg I
PRUPE_ppa025544mg Prunus persica PRUPE_ppa025544mg I
SapurV1A.0036s0930 Salix purpurea SapurV1A.0036s0930 I
SapurV1A.0036s0950 Salix purpurea SapurV1A.0036s0950 I
SapurV1A.0070s0720 Salix purpurea SapurV1A.0070s0720 I
Sb01g036810 Sorghum bicolor Sb01g036810 I
Sb03g040510 Sorghum bicolor Sb03g040510 I
Sb09g023920 Sorghum bicolor Sb09g023920 I
AREB3 Arabidopsis lyrata scaffold_502836.1 I
Si001731m.g Setaria italica Si001731m.g I
Si002173m.g Setaria italica Si002173m.g I
Si022639m.g Setaria italica Si022639m.g I
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I
Solyc10g081350.1 Solanum lycopersicum Solyc10g081350.1 I
TCM_006432 Theobroma cacao TCM_006432 I
TCM_035623 Theobroma cacao TCM_035623 N
TCM_044596 Theobroma cacao TCM_044596 I
Thhalv10006121m.g Eutrema salsugineum Thhalv10006121m.g I
TRAES3BF001900070CFD_g Triticum aestivum TRAES3BF001900070CFD_g I
Traes_3DL_20ED2EA4C Triticum aestivum Traes_3DL_20ED2EA4C I
Traes_5BL_FB4EDEA83 Triticum aestivum Traes_5BL_FB4EDEA83 I
Traes_5DL_73CE92096 Triticum aestivum Traes_5DL_73CE92096 I
TRIUR3_24203 Triticum urartu TRIUR3_24203 I
TRIUR3_29638 Triticum urartu TRIUR3_29638 I
VIT_12s0055g00420 Vitis vinifera VIT_12s0055g00420 I
VIT_13s0175g00120 Vitis vinifera VIT_13s0175g00120 I
VIT_18s0072g00470 Vitis vinifera VIT_18s0072g00470 N