BBX (Meleagris gallopavo)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSMGAG00000014384 T328339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.741 0.986
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.741 0.986
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.708 0.971
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.519 0.609
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.468 0.580
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.430 0.493
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.429 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000015219 Sox 80 148

Links

Other Sox family TFs
Other Meleagris gallopavo TFs

284 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006159 Ricinus communis 29908.m006159 N 0.000
cassava32027.m1 Manihot esculenta cassava32027.m1 N 0.000
cassava44367.m1 Manihot esculenta cassava44367.m1 N 0.000
Ca_26279 Cicer arietinum Ca_26279 N 0.000
Ciclev10000940m.g Citrus clementina Ciclev10000940m.g N 0.000
Eucgr.L03490 Eucalyptus grandis Eucgr.L03490 N 0.000
evm.TU.supercontig_36.32 Carica papaya evm.TU.supercontig_36.32 N 0.000
gene11137-v1.0-hybrid Fragaria vesca gene11137-v1.0-hybrid N 0.000
GLYMA04G43090 Glycine max GLYMA04G43090 N 0.000
GLYMA06G11610 Glycine max GLYMA06G11610 N 0.000
Gorai.009G244200 Gossypium raimondii Gorai.009G244200 N 0.000
Gorai.010G048800 Gossypium raimondii Gorai.010G048800 N 0.000
LjT15C06.70.nc Lotus japonicus LjT15C06.70.nc N 0.000
LjT26J05.10.nc Lotus japonicus LjT26J05.10.nc N 0.000
Lus10008316.g Linum usitatissimum Lus10008316.g N 0.000
Lus10028056.g Linum usitatissimum Lus10028056.g N 0.000
MDP0000319342 Malus domestica MDP0000319342 N 0.000
MDP0000884524 Malus domestica MDP0000884524 N 0.000
MTR_3g072710 Medicago truncatula MTR_3g072710 N 0.000
orange1.1g011012m.g Citrus sinensis orange1.1g011012m.g N 0.000
PGSC0003DMG400012071 Solanum tuberosum PGSC0003DMG400012071 N 0.000
Pm004863 Prunus mume Pm004863 N 0.000
POPTR_0002s08660 Populus trichocarpa POPTR_0002s08660 N 0.000
POPTR_0005s15900 Populus trichocarpa POPTR_0005s15900 N 0.000
PRUPE_ppa018977mg Prunus persica PRUPE_ppa018977mg N 0.000
SapurV1A.0010s0900 Salix purpurea SapurV1A.0010s0900 N 0.000
SapurV1A.0105s0110 Salix purpurea SapurV1A.0105s0110 N 0.000
Solyc11g013150.1 Solanum lycopersicum Solyc11g013150.1 N 0.000
TCM_035069 Theobroma cacao TCM_035069 N 0.000
VIT_18s0001g03310 Vitis vinifera VIT_18s0001g03310 N 0.000