GE25578 (Drosophila yakuba)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 FBgn0242642 T329820_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.427 0.283
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.427 0.283
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.427 0.283
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.420 0.283
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.420 0.283
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0270588 Sox 163 208

Links

Other Sox family TFs
Other Drosophila yakuba TFs

475 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28353.m000054 Ricinus communis 28353.m000054 I 0.000
ERF038 Arabidopsis thaliana AT2G35700 D 0.000
ERF039 Arabidopsis thaliana AT4G16750 D 0.000
Bo1g053270 Brassica oleracea Bo1g053270 I 0.000
Bo3g028500 Brassica oleracea Bo3g028500 I 0.000
Bo4g036220 Brassica oleracea Bo4g036220 I 0.000
Bo7g104770 Brassica oleracea Bo7g104770 I 0.000
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.000
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.000
Bra005314 Brassica rapa Bra005314 I 0.000
Bra012693 Brassica rapa Bra012693 I 0.000
Bra017302 Brassica rapa Bra017302 I 0.000
Bra023026 Brassica rapa Bra023026 I 0.000
Bra040092 Brassica rapa Bra040092 I 0.000
BRADI5G17630 Brachypodium distachyon BRADI5G17630 N 0.000
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.000
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.000
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.000
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.000
Ca_12765 Cicer arietinum Ca_12765 I 0.000
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.000
Cla005715 Citrullus lanatus Cla005715 I 0.000
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.000
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.000
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.000
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.000
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.000
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.000
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.000
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.000
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.000
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.000
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.000
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.000
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.000
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.000
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.000
PK25970.1 Cannabis sativa PK25970.1 I 0.000
Pm023417 Prunus mume Pm023417 I 0.000
POPTR_0003s07700 Populus trichocarpa POPTR_0003s07700 I 0.000
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.000
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.000
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.000
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.000
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.000
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.000
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.000
TCM_015930 Theobroma cacao TCM_015930 I 0.000
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.000
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.000