Phatr3_J50336 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J50336 T331932_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J50336.p1 Sox 50 88
Phatr3_J50336.p1 Sox 92 142

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_045_00093 Aquilegia coerulea Aquca_045_00093 N 0.000
NFXL2 Arabidopsis thaliana AT5G05660 N 0.000
Bo9g177030 Brassica oleracea Bo9g177030 N 0.000
Bostr.13129s0405 Boechera stricta Bostr.13129s0405 N 0.000
Bra009123 Brassica rapa Bra009123 N 0.000
Cagra.1504s0067 Capsella grandiflora Cagra.1504s0067 N 0.000
Carubv10003051m.g Capsella rubella Carubv10003051m.g N 0.000
cassava20878.m1 Manihot esculenta cassava20878.m1 N 0.000
Ca_13412 Cicer arietinum Ca_13412 N 0.000
Cucsa.136670 Cucumis sativus Cucsa.136670 N 0.000
Eucgr.J00206 Eucalyptus grandis Eucgr.J00206 N 0.000
evm.TU.supercontig_19.173 Carica papaya evm.TU.supercontig_19.173 N 0.000
ATNFXL2 Arabidopsis lyrata fgenesh2_kg.6__500__AT5G05660.1 N 0.000
Gorai.010G197800 Gossypium raimondii Gorai.010G197800 N 0.000
mgf001689m Mimulus guttatus mgf001689m N 0.000
MLOC_4879 Hordeum vulgare MLOC_4879 N 0.000
Pm018929 Prunus mume Pm018929 N 0.000
PRUPE_ppa001277mg Prunus persica PRUPE_ppa001277mg N 0.000
SELMODRAFT_510 Selaginella moellendorffii SELMODRAFT_510 N 0.000
Solyc06g051570.2 Solanum lycopersicum Solyc06g051570.2 N 0.000
TCM_042496 Theobroma cacao TCM_042496 N 0.000
Traes_3AS_496047B73 Triticum aestivum Traes_3AS_496047B73 N 0.000
ATNFXL2 Vitis vinifera VIT_13s0067g00920 N 0.000