CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phatr3_J50336
(
Phaeodactylum tricornutum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Phatr3_J50336
T331932_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phatr3_J50336.p1
Sox
50
88
PRRPLSAYNIFFKEERARMLANASEKAASAEIEENEGNE
Phatr3_J50336.p1
Sox
92
142
APSTKGKIGFEAMAKTIGKRWKELEAENLERYKKLAKEDMERYRVEMDKYH
Links
Other
Sox
family TFs
Other
Phaeodactylum tricornutum
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgenesh2_kg.C_130080
Fragilariopsis cylindrus
estExt_fgenesh2_kg.C_130080
N
0.512
Phatr3_J33840
Phaeodactylum tricornutum
Phatr3_J33840
N
0.499
Phatr3_J49937
Phaeodactylum tricornutum
Phatr3_J49937
N
0.493
Thaps11168
Thalassiosira pseudonana
Thaps11168
N
0.479
fgenesh2_pg.4_#_1036
Fragilariopsis cylindrus
fgenesh2_pg.4_#_1036
N
0.457
Phatr3_J49938
Phaeodactylum tricornutum
Phatr3_J49938
N
0.454
Thaps22889
Thalassiosira pseudonana
Thaps22889
N
0.454
Phatr3_J50240
Phaeodactylum tricornutum
Phatr3_J50240
N
0.452
Phatr3_J49506
Phaeodactylum tricornutum
Phatr3_J49506
N
0.443
fgenesh2_pg.9_#_75
Fragilariopsis cylindrus
fgenesh2_pg.9_#_75
N
0.436
Phatr3_J38097
Phaeodactylum tricornutum
Phatr3_J38097
N
0.428
fgenesh2_pg.9_#_353
Fragilariopsis cylindrus
fgenesh2_pg.9_#_353
N
0.424