fgenesh2_pg.9_#_353 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.9_#_353 T334135_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.9_#_353 Sox 69 91
fgenesh2_pg.9_#_353 Sox 97 155

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.565
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.537
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.521
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.521
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.521
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.512
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.509
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.508
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.507
MAM_05902 Metarhizium album MAM_05902 N 0.502
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.502
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.501
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.497
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.495
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.493
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.493
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.489
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.485
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.479
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.478
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.476
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.473
Thaps22372 Thalassiosira pseudonana Thaps22372 N 0.473
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.462
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.460
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.459
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.453
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.447
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.446
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.439
SAKL0H00726g Lachancea kluyveri SAKL0H00726g N 0.434
Thapsdraft1840 Thalassiosira pseudonana Thapsdraft1840 N 0.434
Phatr3_J48554 Phaeodactylum tricornutum Phatr3_J48554 N 0.433
Moror_8439 Moniliophthora roreri Moror_8439 N 0.428
Kwal_9519 Kluyveromyces waltii Kwal_9519 N 0.425
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.424
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.423
LALA0_S10e00254g Lachancea lanzarotensis LALA0_S10e00254g N 0.417
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.417