estExt_fgenesh2_kg.C_130080 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh2_kg.C_130080 T334007_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_kg.C_130080 Sox 52 81
estExt_fgenesh2_kg.C_130080 Sox 99 155

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.553
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.552
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.530
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.512
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.503
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.496
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.490
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.487
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.479
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.470
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.467
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.462
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.460
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.455
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.452
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.437
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.432
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.431
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.430
PAS_chr1-1_0442 Komagataella pastoris PAS_chr1-1_0442 N 0.429
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.429
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.427
Thaps23446 Thalassiosira pseudonana Thaps23446 N 0.427
fgenesh2_pg.9_#_75 Fragilariopsis cylindrus fgenesh2_pg.9_#_75 N 0.427
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.424
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.423
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.423
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.422
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.422
Thaps22372 Thalassiosira pseudonana Thaps22372 N 0.419