Phatr3_J49937 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J49937 T331929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J49937.p1 Sox 194 231
Phatr3_J49937.p1 Sox 339 394

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.503
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.496
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.493
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.478
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.455
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.453
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.447
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.447
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.444
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.441
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.440
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.440
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.440
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.432
fgenesh2_pg.9_#_75 Fragilariopsis cylindrus fgenesh2_pg.9_#_75 N 0.424