Thaps22889 (Thalassiosira pseudonana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Thaps22889 T332918_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thaps22889 Sox 380 409
Thaps22889 Sox 438 492

Links

Other Sox family TFs
Other Thalassiosira pseudonana TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.530
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.524
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.518
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.511
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.509
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.495
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.491
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.488
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.482
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.480
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.472
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.460
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.458
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.455
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.455
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.455
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.454
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.452
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.452
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.450
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.447
Thaps22372 Thalassiosira pseudonana Thaps22372 N 0.447
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.445
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.444
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.436
Thaps23446 Thalassiosira pseudonana Thaps23446 N 0.431
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.430
Thapsdraft1840 Thalassiosira pseudonana Thapsdraft1840 N 0.425
MAM_05902 Metarhizium album MAM_05902 N 0.421
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.421