fgenesh2_pg.4_#_1036 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.4_#_1036 T334132_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.4_#_1036 Sox 273 303
fgenesh2_pg.4_#_1036 Sox 321 374

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.518
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.483
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.467
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.464
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.464
fgenesh2_pg.9_#_75 Fragilariopsis cylindrus fgenesh2_pg.9_#_75 N 0.463
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.458
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.457
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.457
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.450
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.439
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.436
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.434
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.434
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.430
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.424
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.422
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.421
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.420
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.417