Phatr3_J49938 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J49938 T331930_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J49938.p1 Sox 190 219
Phatr3_J49938.p1 Sox 233 288

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.553
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.527
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.518
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.497
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.492
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.488
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.485
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.483
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.481
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.476
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.476
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.476
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.475
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.473
Thaps22372 Thalassiosira pseudonana Thaps22372 N 0.469
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.463
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.457
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.455
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.454
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.454
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.447
PAS_chr1-1_0442 Komagataella pastoris PAS_chr1-1_0442 N 0.439
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.439
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.438
Thaps23446 Thalassiosira pseudonana Thaps23446 N 0.436
MAM_05902 Metarhizium album MAM_05902 N 0.426
Thaps22858 Thalassiosira pseudonana Thaps22858 N 0.426
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.426
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.425
fgenesh2_pg.9_#_75 Fragilariopsis cylindrus fgenesh2_pg.9_#_75 N 0.421
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.417
ENSMMUG00000021151 Macaca mulatta ENSMMUG00000021151 N 0.416
ENSMMUP00000027845 Macaca fascicularis ENSMMUP00000027845 N 0.416