CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.7_#_214
(
Fragilariopsis cylindrus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgenesh2_pg.7_#_214
T334133_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.7_#_214
Sox
45
81
PKRPLSAYNMFFQNYRERIVSGKVGDATPEEITHSVE
fgenesh2_pg.7_#_214
Sox
90
146
GPKRRQDRVSHNRISFGDLARTIADKWKILDPKSRSIYSHYAGKEKNRYRKEVLIWK
Links
Other
Sox
family TFs
Other
Fragilariopsis cylindrus
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_Genewise1Plus.C_70298
Fragilariopsis cylindrus
estExt_Genewise1Plus.C_70298
N
0.486
fgenesh2_pg.9_#_353
Fragilariopsis cylindrus
fgenesh2_pg.9_#_353
N
0.459
Phatr3_J49937
Phaeodactylum tricornutum
Phatr3_J49937
N
0.455
Phatr3_J38097
Phaeodactylum tricornutum
Phatr3_J38097
N
0.453
Phatr3_J49506
Phaeodactylum tricornutum
Phatr3_J49506
N
0.448
Thaps22889
Thalassiosira pseudonana
Thaps22889
N
0.445
Phatr3_J47350
Phaeodactylum tricornutum
Phatr3_J47350
N
0.444
fgenesh2_pg.9_#_75
Fragilariopsis cylindrus
fgenesh2_pg.9_#_75
N
0.442
Phatr3_J42576
Phaeodactylum tricornutum
Phatr3_J42576
N
0.438
Thapsdraft651
Thalassiosira pseudonana
Thapsdraft651
N
0.428
Phatr3_J49938
Phaeodactylum tricornutum
Phatr3_J49938
N
0.426
estExt_fgenesh2_kg.C_130080
Fragilariopsis cylindrus
estExt_fgenesh2_kg.C_130080
N
0.423
Thaps5285
Thalassiosira pseudonana
Thaps5285
N
0.419