CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thaps11168
(
Thalassiosira pseudonana
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Thaps11168
T332906_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thaps11168
Sox
296
322
PKRPLSGYNLFFRDERNRILKSLPSRG
Thaps11168
Sox
372
422
KKIPHGKIGFESLAKLIGRRWQELDPAEVERYKKLADVDMKRYKEEMEKFL
Links
Other
Sox
family TFs
Other
Thalassiosira pseudonana
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgenesh2_kg.C_130080
Fragilariopsis cylindrus
estExt_fgenesh2_kg.C_130080
N
0.552
Phatr3_J49938
Phaeodactylum tricornutum
Phatr3_J49938
N
0.527
Phatr3_J33840
Phaeodactylum tricornutum
Phatr3_J33840
N
0.523
fgenesh2_pg.9_#_353
Fragilariopsis cylindrus
fgenesh2_pg.9_#_353
N
0.502
Phatr3_J49937
Phaeodactylum tricornutum
Phatr3_J49937
N
0.496
Phatr3_J38097
Phaeodactylum tricornutum
Phatr3_J38097
N
0.491
Phatr3_J47350
Phaeodactylum tricornutum
Phatr3_J47350
N
0.485
Thaps5285
Thalassiosira pseudonana
Thaps5285
N
0.484
Thaps22889
Thalassiosira pseudonana
Thaps22889
N
0.482
Phatr3_J50240
Phaeodactylum tricornutum
Phatr3_J50240
N
0.479
Phatr3_J50336
Phaeodactylum tricornutum
Phatr3_J50336
N
0.479
estExt_Genewise1Plus.C_70298
Fragilariopsis cylindrus
estExt_Genewise1Plus.C_70298
N
0.478
S40285_05706
Stachybotrys chlorohalonata
S40285_05706
N
0.477
Thaps25909
Thalassiosira pseudonana
Thaps25909
N
0.474
Thaps24954
Thalassiosira pseudonana
Thaps24954
N
0.468
PAS_chr1-1_0442
Komagataella pastoris
PAS_chr1-1_0442
N
0.467
XP_002490100.1
Pichia pastoris
XP_002490100.1
N
0.467
fgenesh2_pg.4_#_1036
Fragilariopsis cylindrus
fgenesh2_pg.4_#_1036
N
0.464
Thaps10099
Thalassiosira pseudonana
Thaps10099
N
0.463
Thapsdraft651
Thalassiosira pseudonana
Thapsdraft651
N
0.463
Thaps4075
Thalassiosira pseudonana
Thaps4075
N
0.458
Thaps4076
Thalassiosira pseudonana
Thaps4076
N
0.458
TGME49_081900
Toxoplasma gondii
TGME49_081900
N
0.456
Phatr3_J49506
Phaeodactylum tricornutum
Phatr3_J49506
N
0.454
UCREL1_5722
Eutypa lata
UCREL1_5722
N
0.449
MAM_05902
Metarhizium album
MAM_05902
N
0.441
Thaps12024
Thalassiosira pseudonana
Thaps12024
N
0.437
Thaps22372
Thalassiosira pseudonana
Thaps22372
N
0.437
Phatr3_J39045
Phaeodactylum tricornutum
Phatr3_J39045
N
0.436
GPLIN_000170600
Globodera pallida
GPLIN_000170600
N
0.436
GLOINDRAFT_9339
Rhizophagus irregularis
GLOINDRAFT_9339
N
0.433
Phatr3_J42576
Phaeodactylum tricornutum
Phatr3_J42576
N
0.428
NCLIV_023590
Neospora caninum
NCLIV_023590
N
0.424