MDP0000268093 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000268093 T334607_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.460 0.614
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.460 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000268093 Sox 177 243
MDP0000268093 Sox 293 359
MDP0000268093 Sox 421 501

Links

Other Sox family TFs
Other Malus domestica TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G19184 Arabidopsis thaliana AT3G19184 N 0.000
Bo6g124000 Brassica oleracea Bo6g124000 N 0.000
Bostr.19424s0744 Boechera stricta Bostr.19424s0744 N 0.000
Bra035129 Brassica rapa Bra035129 N 0.000
Carubv10014420m.g Capsella rubella Carubv10014420m.g N 0.000
Cla016258 Citrullus lanatus Cla016258 N 0.000
Cucsa.219930 Cucumis sativus Cucsa.219930 N 0.000
evm.TU.supercontig_62.23 Carica papaya evm.TU.supercontig_62.23 N 0.000
fgenesh2_kg.3__2134__AT3G19184.1 Arabidopsis lyrata fgenesh2_kg.3__2134__AT3G19184.1 N 0.000
Gorai.013G042700 Gossypium raimondii Gorai.013G042700 N 0.000
Lus10014044.g Linum usitatissimum Lus10014044.g N 0.000
Lus10019870.g Linum usitatissimum Lus10019870.g N 0.000
mgf008645m Mimulus guttatus mgf008645m N 0.000
orange1.1g036915m.g Citrus sinensis orange1.1g036915m.g N 0.000
PGSC0003DMG400025792 Solanum tuberosum PGSC0003DMG400025792 N 0.000
PK25650.1 Cannabis sativa PK25650.1 N 0.000
POPTR_0009s10590 Populus trichocarpa POPTR_0009s10590 N 0.000
POPTR_0009s10600 Populus trichocarpa POPTR_0009s10600 N 0.000
PRUPE_ppb024440mg Prunus persica PRUPE_ppb024440mg N 0.000
SapurV1A.0090s0760 Salix purpurea SapurV1A.0090s0760 N 0.000
SapurV1A.0090s0770 Salix purpurea SapurV1A.0090s0770 N 0.000
Solyc01g108140.2 Solanum lycopersicum Solyc01g108140.2 N 0.000
TCM_007039 Theobroma cacao TCM_007039 N 0.000
Thhalv10019015m.g Eutrema salsugineum Thhalv10019015m.g N 0.000
VIT_03s0063g00620 Vitis vinifera VIT_03s0063g00620 N 0.000