Pavir.Ab01026 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ab01026 T334657_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.430 0.614
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.430 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01026.1.p Sox 161 226
Pavir.Ab01026.1.p Sox 284 350
Pavir.Ab01026.1.p Sox 409 477

Links

Other Sox family TFs
Other Panicum virgatum TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015359 Calypte anna Aan_R015359 I 0.000
ACAC_0000529401 Angiostrongylus cantonensis ACAC_0000529401 I 0.000
ACOC_0001130401 Angiostrongylus costaricensis ACOC_0001130401 I 0.000
Afo_R001755 Aptenodytes forsteri Afo_R001755 I 0.000
Alligator_sinensis_CCG020374.1 Alligator sinensis Alligator_sinensis_CCG020374.1 I 0.000
ANCCAN_29852 Ancylostoma caninum ANCCAN_29852 I 0.000
ANCCEY_10108 Ancylostoma ceylanicum ANCCEY_10108 I 0.000
ANCDUO_21978 Ancylostoma duodenale ANCDUO_21978 I 0.000
ASU_07002 Ascaris suum ASU_07002 I 0.000
Bm9236 Brugia malayi Bm9236 I 0.000
Brh_R010228 Buceros rhinoceros Brh_R010228 I 0.000
BTMF_0000075201 Brugia timori BTMF_0000075201 I 0.000
CAJ80803 Xenopus laevis CAJ80803 I 0.000
CBG14844 Caenorhabditis briggsae CBG14844 I 0.000
CBN15373 Caenorhabditis brenneri CBN15373 I 0.000
CGI_10012022 Crassostrea gigas CGI_10012022 I 0.000
CJA04579 Caenorhabditis japonica CJA04579 I 0.000
Cmyd_10011319 Chelonia mydas Cmyd_10011319 I 0.000
CRE00192 Caenorhabditis remanei CRE00192 I 0.000
CRE25083 Caenorhabditis remanei CRE25083 I 0.000
DICVIV_08037 Dictyocaulus viviparus DICVIV_08037 I 0.000
DME_0000745901 Dracunculus medinensis DME_0000745901 I 0.000
EEL_0000443001 Elaeophora elaphi EEL_0000443001 I 0.000
OSR1 Anolis carolinensis ENSACAG00000007059 I 0.000
ENSACAG00000016280 Anolis carolinensis ENSACAG00000016280 I 0.000
ENSAMXG00000014504 Astyanax mexicanus ENSAMXG00000014504 I 0.000
ENSAMXG00000021239 Astyanax mexicanus ENSAMXG00000021239 I 0.000
ENSAPLG00000007971 Anas platyrhynchos ENSAPLG00000007971 I 0.000
OSR1 Bos taurus ENSBTAG00000008113 I 0.000
ENSBTAG00000013213 Bos taurus ENSBTAG00000013213 I 0.000
ENSBTAP00000010670-D1 Bos grunniens ENSBTAP00000010670-D1 I 0.000
ENSBTAP00000017584-D1 Bos grunniens ENSBTAP00000017584-D1 I 0.000
OSR1 Canis familiaris ENSCAFG00000003775 I 0.000
ENSCING00000006616 Ciona intestinalis ENSCING00000006616 I 0.000
OSR1 Callithrix jacchus ENSCJAG00000007379 I 0.000
OSR1 Cavia porcellus ENSCPOG00000002025 I 0.000
ENSCPOG00000020572 Cavia porcellus ENSCPOG00000020572 I 0.000
ENSCSAG00000008012 Chlorocebus sabaeus ENSCSAG00000008012 I 0.000
ENSCSAG00000012312 Chlorocebus sabaeus ENSCSAG00000012312 I 0.000
osr1 Danio rerio ENSDARG00000014091 I 0.000
osr2 Danio rerio ENSDARG00000038006 I 0.000
OSR1 Dasypus novemcinctus ENSDNOG00000001304 I 0.000
Osr1 Dipodomys ordii ENSDORG00000000798 I 0.000
OSR1 Equus caballus ENSECAG00000013593 I 0.000
OSR1 Erinaceus europaeus ENSEEUG00000015377 I 0.000
OSR1 Echinops telfairi ENSETEG00000013563 I 0.000
ENSFALG00000001785 Ficedula albicollis ENSFALG00000001785 I 0.000
ENSFCAG00000014220 Felis catus ENSFCAG00000014220 I 0.000
OSR1 Felis catus ENSFCAG00000026754 I 0.000
OSR1 Homo sapiens ENSG00000143867 D 0.000
OSR2 Homo sapiens ENSG00000164920 D 0.000
osr2 Gasterosteus aculeatus ENSGACG00000003524 I 0.000
osr1 Gasterosteus aculeatus ENSGACG00000020147 I 0.000
OSR1 Gallus gallus ENSGALG00000016473 I 0.000
OSR1 Gorilla gorilla ENSGGOG00000016877 I 0.000
ENSGMOG00000016368 Gadus morhua ENSGMOG00000016368 I 0.000
ENSLACG00000005856 Latimeria chalumnae ENSLACG00000005856 I 0.000
ENSLAFG00000009420 Loxodonta africana ENSLAFG00000009420 I 0.000
OSR1 Loxodonta africana ENSLAFG00000027174 I 0.000
ENSLOCG00000009790 Lepisosteus oculatus ENSLOCG00000009790 I 0.000
ENSLOCG00000017185 Lepisosteus oculatus ENSLOCG00000017185 I 0.000
ENSLOCG00000017186 Lepisosteus oculatus ENSLOCG00000017186 I 0.000
ENSMEUG00000016111 Macropus eugenii ENSMEUG00000016111 I 0.000
OSR1 Meleagris gallopavo ENSMGAG00000014033 I 0.000
OSR1 Microcebus murinus ENSMICG00000004493 I 0.000
OSR1 Myotis lucifugus ENSMLUG00000011374 I 0.000
ENSMLUG00000013412 Myotis lucifugus ENSMLUG00000013412 I 0.000
OSR1 Monodelphis domestica ENSMODG00000010584 I 0.000
ENSMPUG00000013697 Mustela putorius furo ENSMPUG00000013697 I 0.000
ENSMPUG00000015246 Mustela putorius furo ENSMPUG00000015246 I 0.000
Osr2 Mus musculus ENSMUSG00000022330 D 0.000
Osr1 Mus musculus ENSMUSG00000048387 D 0.000
ENSNLEG00000002004 Nomascus leucogenys ENSNLEG00000002004 I 0.000
ENSOARG00000016880 Ovis aries ENSOARG00000016880 I 0.000
OSR1 Oryctolagus cuniculus ENSOCUG00000006091 I 0.000
ENSOCUG00000022383 Oryctolagus cuniculus ENSOCUG00000022383 I 0.000
OSR1 Otolemur garnettii ENSOGAG00000003047 I 0.000
ENSONIG00000011343 Oreochromis niloticus ENSONIG00000011343 I 0.000
osr1 Oryzias latipes ENSORLG00000010734 I 0.000
ENSP00000272223 Macaca fascicularis ENSP00000272223 I 0.000
ENSPANG00000012764 Papio anubis ENSPANG00000012764 I 0.000
ENSPANG00000025998 Papio anubis ENSPANG00000025998 I 0.000
OSR1 Procavia capensis ENSPCAG00000008261 I 0.000
ENSPFOG00000006861 Poecilia formosa ENSPFOG00000006861 I 0.000
ENSPFOG00000012273 Poecilia formosa ENSPFOG00000012273 I 0.000
ENSPMAG00000001278 Petromyzon marinus ENSPMAG00000001278 I 0.000
ENSPPYG00000012624 Pongo abelii ENSPPYG00000012624 I 0.000
ENSPSIG00000011751 Pelodiscus sinensis ENSPSIG00000011751 I 0.000
ENSPSIG00000011787 Pelodiscus sinensis ENSPSIG00000011787 I 0.000
OSR1 Pan troglodytes ENSPTRG00000011683 I 0.000
OSR1 Pteropus vampyrus ENSPVAG00000009615 I 0.000
Osr1 Rattus norvegicus ENSRNOG00000004210 I 0.000
Osr2 Rattus norvegicus ENSRNOG00000011136 I 0.000
ENSSHAG00000007793 Sarcophilus harrisii ENSSHAG00000007793 I 0.000
ENSSHAG00000010395 Sarcophilus harrisii ENSSHAG00000010395 I 0.000
OSR2 Sus scrofa ENSSSCG00000006073 I 0.000
ENSSSCG00000027549 Sus scrofa ENSSSCG00000027549 I 0.000
ENSSTOG00000015454 Ictidomys tridecemlineatus ENSSTOG00000015454 I 0.000
ENSSTOG00000021263 Ictidomys tridecemlineatus ENSSTOG00000021263 I 0.000
OSR1 Tupaia belangeri ENSTBEG00000004954 I 0.000
ENSTGUG00000012027 Taeniopygia guttata ENSTGUG00000012027 I 0.000
osr2 Tetraodon nigroviridis ENSTNIG00000013301 I 0.000
osr1 Tetraodon nigroviridis ENSTNIG00000018677 I 0.000
osr1 Tetraodon nigroviridis ENSTNIG00000018678 I 0.000
osr1 Takifugu rubripes ENSTRUG00000005046 I 0.000
osr2 Takifugu rubripes ENSTRUG00000011070 I 0.000
OSR1 Tursiops truncatus ENSTTRG00000009823 I 0.000
ENSXMAG00000002498 Xiphophorus maculatus ENSXMAG00000002498 I 0.000
ENSXMAG00000015661 Xiphophorus maculatus ENSXMAG00000015661 I 0.000
EVEC_0001078501 Enterobius vermicularis EVEC_0001078501 I 0.000
Gfo_R006005 Geospiza fortis Gfo_R006005 I 0.000
Gfo_R015235 Geospiza fortis Gfo_R015235 I 0.000
GPUH_0001513701 Gongylonema pulchrum GPUH_0001513701 I 0.000
HCOI00889400 Haemonchus contortus HCOI00889400 I 0.000
HPLM_0001493201 Haemonchus placei HPLM_0001493201 I 0.000
LOAG_00579 Loa loa LOAG_00579 I 0.000
LotgiG102775 Lottia gigantea LotgiG102775 I 0.000
LotgiG130661 Lottia gigantea LotgiG130661 I 0.000
Myotis_brandtii_OSR1_10031301 Myotis brandtii Myotis_brandtii_OSR1_10031301 I 0.000
nAv.1.0.1.g06169 Acanthocheilonema viteae nAv.1.0.1.g06169 I 0.000
NBR_0000990501 Nippostrongylus brasiliensis NBR_0000990501 I 0.000
nDi.2.2.2.g05871 Dirofilaria immitis nDi.2.2.2.g05871 I 0.000
NECAME_08408 Necator americanus NECAME_08408 I 0.000
nLs.2.1.2.g06827 Litomosoides sigmodontis nLs.2.1.2.g06827 I 0.000
nOo.2.0.1.g01159 Onchocerca ochengi nOo.2.0.1.g01159 I 0.000
Ogr01515 Ophisaurus gracilis Ogr01515 I 0.000
Ogr10172 Ophisaurus gracilis Ogr10172 I 0.000
Pvit_07082 Pogona vitticeps Pvit_07082 I 0.000
SMUV_0000818001 Syphacia muris SMUV_0000818001 I 0.000
Tal_R009607 Tyto alba Tal_R009607 I 0.000
TCNE_0000229401 Toxocara canis TCNE_0000229401 I 0.000
odd-2 Caenorhabditis elegans WBGene00003846 D 0.000
WBGene00239217 Onchocerca volvulus WBGene00239217 I 0.000
osr1 Xenopus tropicalis XB-GENE-481410 I 0.000
osr2.L Xenopus laevis XB-GENE-864802 I 0.000