CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nLs.2.1.2.g06827
(
Litomosoides sigmodontis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
nLs.2.1.2.g06827
T155345_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Osr2
M00132_2.00
Mus musculus
NGCTWCYGNN
NNCRGWAGCN
PBM
Badis et al.(2009)
Osr2_1727
0.764
0.812
odd-2
M00618_2.00
Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN
PBM
Narasimhan et al.(2015)
pTH9150
0.760
0.812
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nLs.2.1.2.t06827-RA
C2H2 ZF
169
191
FICQFCNRHFTKSYNLLIHERTH
nLs.2.1.2.t06827-RA
C2H2 ZF
197
219
YDCNICGKAFRRQDHLRDHRFIH
nLs.2.1.2.t06827-RA
C2H2 ZF
225
247
FKCDICHKGFCQSRTLQVHRISH
Links
Other
C2H2 ZF
family TFs
Other
Litomosoides sigmodontis
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WBGene00239217
Onchocerca volvulus
WBGene00239217
I
0.820
ASU_07002
Ascaris suum
ASU_07002
I
0.820
EEL_0000443001
Elaeophora elaphi
EEL_0000443001
I
0.820
nOo.2.0.1.g01159
Onchocerca ochengi
nOo.2.0.1.g01159
I
0.820
TCNE_0000229401
Toxocara canis
TCNE_0000229401
I
0.820
nDi.2.2.2.g05871
Dirofilaria immitis
nDi.2.2.2.g05871
I
0.817
Bm9236
Brugia malayi
Bm9236
I
0.816
BTMF_0000075201
Brugia timori
BTMF_0000075201
I
0.816
LOAG_00579
Loa loa
LOAG_00579
I
0.804
nAv.1.0.1.g06169
Acanthocheilonema viteae
nAv.1.0.1.g06169
I
0.804
GPUH_0001513701
Gongylonema pulchrum
GPUH_0001513701
I
0.796
DME_0000745901
Dracunculus medinensis
DME_0000745901
I
0.794
NBR_0000990501
Nippostrongylus brasiliensis
NBR_0000990501
I
0.794
ACAC_0000529401
Angiostrongylus cantonensis
ACAC_0000529401
I
0.786
ACOC_0001130401
Angiostrongylus costaricensis
ACOC_0001130401
I
0.786
DICVIV_08037
Dictyocaulus viviparus
DICVIV_08037
I
0.786
EVEC_0001078501
Enterobius vermicularis
EVEC_0001078501
I
0.782
SMUV_0000818001
Syphacia muris
SMUV_0000818001
I
0.782
ANCCAN_29852
Ancylostoma caninum
ANCCAN_29852
I
0.779
ANCCEY_10108
Ancylostoma ceylanicum
ANCCEY_10108
I
0.779
ANCDUO_21978
Ancylostoma duodenale
ANCDUO_21978
I
0.779
NECAME_08408
Necator americanus
NECAME_08408
I
0.779
HCOI00889400
Haemonchus contortus
HCOI00889400
I
0.776
HPLM_0001493201
Haemonchus placei
HPLM_0001493201
I
0.776
Ppa-odd-1
Pristionchus pacificus
PPA09938
I
0.771
scaffold395-EXSNAP2012.4
Pristionchus exspectatus
scaffold395-EXSNAP2012.4
I
0.771
ENSACAG00000016280
Anolis carolinensis
ENSACAG00000016280
I
0.764
ENSAMXG00000014504
Astyanax mexicanus
ENSAMXG00000014504
I
0.764
ENSBTAG00000013213
Bos taurus
ENSBTAG00000013213
I
0.764
ENSCPOG00000020572
Cavia porcellus
ENSCPOG00000020572
I
0.764
ENSCSAG00000012312
Chlorocebus sabaeus
ENSCSAG00000012312
I
0.764
osr2
Danio rerio
ENSDARG00000038006
I
0.764
ENSFCAG00000014220
Felis catus
ENSFCAG00000014220
I
0.764
OSR2
Homo sapiens
ENSG00000164920
D
0.764
osr2
Gasterosteus aculeatus
ENSGACG00000003524
I
0.764
ENSGMOG00000016368
Gadus morhua
ENSGMOG00000016368
I
0.764
ENSLAFG00000009420
Loxodonta africana
ENSLAFG00000009420
I
0.764
ENSLOCG00000009790
Lepisosteus oculatus
ENSLOCG00000009790
I
0.764
ENSMLUG00000013412
Myotis lucifugus
ENSMLUG00000013412
I
0.764
ENSMPUG00000015246
Mustela putorius furo
ENSMPUG00000015246
I
0.764
Osr2
Mus musculus
ENSMUSG00000022330
D
0.764
ENSOCUG00000022383
Oryctolagus cuniculus
ENSOCUG00000022383
I
0.764
ENSPANG00000012764
Papio anubis
ENSPANG00000012764
I
0.764
ENSPFOG00000012273
Poecilia formosa
ENSPFOG00000012273
I
0.764
ENSPSIG00000011787
Pelodiscus sinensis
ENSPSIG00000011787
I
0.764
Osr2
Rattus norvegicus
ENSRNOG00000011136
I
0.764
ENSSHAG00000007793
Sarcophilus harrisii
ENSSHAG00000007793
I
0.764
OSR2
Sus scrofa
ENSSSCG00000006073
I
0.764
ENSSTOG00000021263
Ictidomys tridecemlineatus
ENSSTOG00000021263
I
0.764
ENSTGUG00000012027
Taeniopygia guttata
ENSTGUG00000012027
I
0.764
osr2
Tetraodon nigroviridis
ENSTNIG00000013301
I
0.764
osr2
Takifugu rubripes
ENSTRUG00000011070
I
0.764
ENSXMAG00000002498
Xiphophorus maculatus
ENSXMAG00000002498
I
0.764
Alligator_sinensis_CCG020374.1
Alligator sinensis
Alligator_sinensis_CCG020374.1
I
0.764
ENSBTAP00000017584-D1
Bos grunniens
ENSBTAP00000017584-D1
I
0.764
Gfo_R006005
Geospiza fortis
Gfo_R006005
I
0.764
Ogr10172
Ophisaurus gracilis
Ogr10172
I
0.764
osr2.S
Xenopus laevis
XB-GENE-6254720
I
0.764
osr2.L
Xenopus laevis
XB-GENE-864802
I
0.764
CGI_10012022
Crassostrea gigas
CGI_10012022
I
0.760
CRE00192
Caenorhabditis remanei
CRE00192
I
0.760
ENSCING00000006616
Ciona intestinalis
ENSCING00000006616
I
0.760
LotgiG130661
Lottia gigantea
LotgiG130661
I
0.760
odd-2
Caenorhabditis elegans
WBGene00003846
D
0.760
CBG14844
Caenorhabditis briggsae
CBG14844
I
0.756
CBN15373
Caenorhabditis brenneri
CBN15373
I
0.756
CJA04579
Caenorhabditis japonica
CJA04579
I
0.756