CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold395-EXSNAP2012.4
(
Pristionchus exspectatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
scaffold395-EXSNAP2012.4
T156073_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
odd-2
M00618_2.00
Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN
PBM
Narasimhan et al.(2015)
pTH9150
0.766
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold395-EXSNAP2012.4
C2H2 ZF
186
208
FICKFCQRHFTKSYNLLIHERTH
scaffold395-EXSNAP2012.4
C2H2 ZF
214
236
YSCEICQKAFRRQDHLRDHRFIH
scaffold395-EXSNAP2012.4
C2H2 ZF
242
264
FKCEVCAKGFCQARTLQVHRASH
Links
Other
C2H2 ZF
family TFs
Other
Pristionchus exspectatus
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ppa-odd-1
Pristionchus pacificus
PPA09938
I
0.827
NBR_0000990501
Nippostrongylus brasiliensis
NBR_0000990501
I
0.793
DICVIV_08037
Dictyocaulus viviparus
DICVIV_08037
I
0.793
NECAME_08408
Necator americanus
NECAME_08408
I
0.790
ANCCAN_29852
Ancylostoma caninum
ANCCAN_29852
I
0.786
ACAC_0000529401
Angiostrongylus cantonensis
ACAC_0000529401
I
0.786
ANCCEY_10108
Ancylostoma ceylanicum
ANCCEY_10108
I
0.786
ACOC_0001130401
Angiostrongylus costaricensis
ACOC_0001130401
I
0.786
ANCDUO_21978
Ancylostoma duodenale
ANCDUO_21978
I
0.786
nDi.2.2.2.g05871
Dirofilaria immitis
nDi.2.2.2.g05871
I
0.777
DME_0000745901
Dracunculus medinensis
DME_0000745901
I
0.777
HPLM_0001493201
Haemonchus placei
HPLM_0001493201
I
0.775
HCOI00889400
Haemonchus contortus
HCOI00889400
I
0.775
TCNE_0000229401
Toxocara canis
TCNE_0000229401
I
0.774
EEL_0000443001
Elaeophora elaphi
EEL_0000443001
I
0.774
nOo.2.0.1.g01159
Onchocerca ochengi
nOo.2.0.1.g01159
I
0.774
nAv.1.0.1.g06169
Acanthocheilonema viteae
nAv.1.0.1.g06169
I
0.774
GPUH_0001513701
Gongylonema pulchrum
GPUH_0001513701
I
0.774
ASU_07002
Ascaris suum
ASU_07002
I
0.774
WBGene00239217
Onchocerca volvulus
WBGene00239217
I
0.774
LOAG_00579
Loa loa
LOAG_00579
I
0.774
nLs.2.1.2.g06827
Litomosoides sigmodontis
nLs.2.1.2.g06827
I
0.771
Bm9236
Brugia malayi
Bm9236
I
0.770
BTMF_0000075201
Brugia timori
BTMF_0000075201
I
0.770
EVEC_0001078501
Enterobius vermicularis
EVEC_0001078501
I
0.769
SMUV_0000818001
Syphacia muris
SMUV_0000818001
I
0.769
CBN15373
Caenorhabditis brenneri
CBN15373
I
0.766
odd-2
Caenorhabditis elegans
WBGene00003846
D
0.766
CJA04579
Caenorhabditis japonica
CJA04579
I
0.766
CBG14844
Caenorhabditis briggsae
CBG14844
I
0.762
CRE00192
Caenorhabditis remanei
CRE00192
I
0.762
LotgiG130661
Lottia gigantea
LotgiG130661
I
0.757