23225_YPR052C (Saccharomyces paradoxus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 23225_YPR052C T335147_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.439 0.946
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.439 0.946
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.433 0.838
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.433 0.838
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23225_YPR052C Sox 21 57

Links

Other Sox family TFs
Other Saccharomyces paradoxus TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP24 Arabidopsis thaliana AT1G30210 D
BGIOSGA025162 Oryza indica BGIOSGA025162 I
Bo5g062580 Brassica oleracea Bo5g062580 I
Bo6g107240 Brassica oleracea Bo6g107240 I
Bo9g052090 Brassica oleracea Bo9g052090 N
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I
Bra032365 Brassica rapa Bra032365 I
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I
Cla020670 Citrullus lanatus Cla020670 I
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I
GLYMA16G05840 Glycine max GLYMA16G05840 N
Lus10017856.g Linum usitatissimum Lus10017856.g I
Lus10038512.g Linum usitatissimum Lus10038512.g I
Lus10042962.g Linum usitatissimum Lus10042962.g I
mgf014960m Mimulus guttatus mgf014960m I
mgf025386m Mimulus guttatus mgf025386m I
MTR_7g015010 Medicago truncatula MTR_7g015010 I
OBART07G03380 Oryza barthii OBART07G03380 I
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I
ONIVA07G01330 Oryza nivara ONIVA07G01330 I
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I
OS07G0152000 Oryza sativa OS07G0152000 I
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I
SELMODRAFT_429489 Selaginella moellendorffii SELMODRAFT_429489 N
SELMODRAFT_441321 Selaginella moellendorffii SELMODRAFT_441321 N
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I
BRC1 Vitis vinifera VIT_17s0000g04180 I