Sakowv30029504m.g (Saccoglossus kowalevskii)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 Sakowv30029504m.g T341198_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx20
M00835_2.00 		Mus musculus
NRRGTGTBAN
NTVACACYYN		 PBM
Weirauch et al.(2013)
pTH3777 		0.884 0.874
Tbx20
M09430_2.00 		Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN		 Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C 		0.884 0.874
Tbx20
M09650_2.00 		Mus musculus
SCTGTCADCASN
NSTGHTGACAGS		 Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636 		0.884 0.874
TBX20
M03565_2.00 		Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_1 		0.884 0.868
TBX20
M03566_2.00 		Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT		 SELEX
Jolma et al.(2013)
TBX20_2 		0.884 0.868
TBX20
M03567_2.00 		Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN		 SELEX
Jolma et al.(2013)
TBX20_3 		0.884 0.868
TBX20
M03568_2.00 		Homo sapiens
DAGGTGTGAWR
YWTCACACCTH		 SELEX
Jolma et al.(2013)
TBX20_4 		0.884 0.868
TBX20
M03569_2.00 		Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_5 		0.884 0.868
TBX20
M05813_2.00 		Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1 		0.884 0.868
TBX20
M05814_2.00 		Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2 		0.884 0.868
TBX20
M05817_2.00 		Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1 		0.884 0.868
TBX20
M05818_2.00 		Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2 		0.884 0.868
TBX20
M11385_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX20_05 		0.884 0.868
TBX20
M05815_2.00 		Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1 		0.884 0.868
TBX20
M05816_2.00 		Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2 		0.884 0.868
TBX20
M05819_2.00 		Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1 		0.884 0.868
TBX20
M05820_2.00 		Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2 		0.884 0.868
mid
M03994_2.00 		Drosophila melanogaster
DAGGTGTKAN
NTMACACCTH		 SELEX
Nitta et al.(2015)
mid_1 		0.816 0.720
XP_001195863
M02498_2.00 		Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2014)
pTH9340 		0.745 0.637
TBX18
M05797_2.00 		Homo sapiens
DDAGGTGTGARV
BYTCACACCTHH		 SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX 		0.744 0.648
TBX18
M11380_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX18_01 		0.744 0.648
TBX18
M05798_2.00 		Homo sapiens
NDAGGYGTGAAN
NTTCACRCCTHN		 SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX 		0.744 0.648
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23948422_peptide T-box 140 326

Links

Other T-box family TFs
Other Saccoglossus kowalevskii TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28779.m000140 Ricinus communis 28779.m000140 I
Aquca_027_00443 Aquilegia coerulea Aquca_027_00443 I
AT1G19490 Arabidopsis thaliana AT1G19490 D
Bo5g027510 Brassica oleracea Bo5g027510 I
Bostr.7128s0552 Boechera stricta Bostr.7128s0552 I
Bra025743 Brassica rapa Bra025743 I
Cagra.1961s0053 Capsella grandiflora Cagra.1961s0053 I
Carubv10011417m.g Capsella rubella Carubv10011417m.g I
cassava31755.valid.m1 Manihot esculenta cassava31755.valid.m1 I
Ciclev10013541m.g Citrus clementina Ciclev10013541m.g I
Cla017983 Citrullus lanatus Cla017983 I
Cucsa.240980 Cucumis sativus Cucsa.240980 I
evm.TU.supercontig_5.51 Carica papaya evm.TU.supercontig_5.51 I
gene30252-v1.0-hybrid Fragaria vesca gene30252-v1.0-hybrid I
GLYMA03G35101 Glycine max GLYMA03G35101 I
GLYMA19G37801 Glycine max GLYMA19G37801 I
Gorai.009G405400 Gossypium raimondii Gorai.009G405400 I
Lus10003255.g Linum usitatissimum Lus10003255.g I
Lus10035597.g Linum usitatissimum Lus10035597.g I
MDP0000147745 Malus domestica MDP0000147745 I
MTR_7g104190 Medicago truncatula MTR_7g104190 I
PK09783.1 Cannabis sativa PK09783.1 I
POPTR_0006s11550 Populus trichocarpa POPTR_0006s11550 I
PRUPE_ppa003901mg Prunus persica PRUPE_ppa003901mg I
SapurV1A.0208s0130 Salix purpurea SapurV1A.0208s0130 I
TCM_022516 Theobroma cacao TCM_022516 I
Thhalv10009681m.g Eutrema salsugineum Thhalv10009681m.g I
VIT_08s0007g03640 Vitis vinifera VIT_08s0007g03640 I