AMTR_s00133p00053750 (Amborella trichopoda)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AMTR_s00133p00053750 T343671_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.886 0.667
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.882 0.667
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.882 0.653
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.882 0.653
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.882 0.653
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.879 0.694
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.872 0.556
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.857 0.528
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.857 0.528
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.825 0.528
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN04417 TCP 31 107

Links

Other TCP family TFs
Other Amborella trichopoda TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001100 Ricinus communis 29646.m001100 I 0.863
29646.m001101 Ricinus communis 29646.m001101 I 0.872
29693.m001968 Ricinus communis 29693.m001968 I 0.830
30192.m000545 Ricinus communis 30192.m000545 I 0.882
AC205574.3_FG006 Zea mays AC205574.3_FG006 I 0.892
AMTR_s00007p00041830 Amborella trichopoda AMTR_s00007p00041830 I 0.947
AMTR_s00021p00158020 Amborella trichopoda AMTR_s00021p00158020 I 0.899
AMTR_s00029p00245970 Amborella trichopoda AMTR_s00029p00245970 I 0.962
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.837
AMTR_s00119p00135380 Amborella trichopoda AMTR_s00119p00135380 I 0.921
AMTR_s00357p00009370 Amborella trichopoda AMTR_s00357p00009370 I 0.824
Aquca_005_00099 Aquilegia coerulea Aquca_005_00099 I 0.889
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.860
TCP3 Arabidopsis thaliana AT1G53230 D 0.882
TCP10 Arabidopsis thaliana AT2G31070 I 0.910
TCP4 Arabidopsis thaliana AT3G15030 D 0.882
TCP2 Arabidopsis thaliana AT4G18390 D 0.857
PCF5 Oryza indica BGIOSGA002128 I 0.879
PCF6 Oryza indica BGIOSGA013684 I 0.828
Bo1g019520 Brassica oleracea Bo1g019520 I 0.863
Bo1g129830 Brassica oleracea Bo1g129830 I 0.905
Bo3g066540 Brassica oleracea Bo3g066540 I 0.877
Bo4g053680 Brassica oleracea Bo4g053680 I 0.891
Bo5g127500 Brassica oleracea Bo5g127500 I 0.890
Bo7g105960 Brassica oleracea Bo7g105960 I 0.853
Bostr.0124s0115 Boechera stricta Bostr.0124s0115 I 0.873
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.831
Bostr.24513s0122 Boechera stricta Bostr.24513s0122 I 0.910
Bostr.28625s0206 Boechera stricta Bostr.28625s0206 I 0.877
Bostr.30275s0311 Boechera stricta Bostr.30275s0311 I 0.867
Bra001579 Brassica rapa Bra001579 I 0.863
Bra012600 Brassica rapa Bra012600 I 0.853
Bra018280 Brassica rapa Bra018280 I 0.891
Bra021586 Brassica rapa Bra021586 I 0.913
Bra027284 Brassica rapa Bra027284 I 0.877
Bra030952 Brassica rapa Bra030952 I 0.871
BRADI1G58450 Brachypodium distachyon BRADI1G58450 I 0.823
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.914
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.865
BRADI2G50190 Brachypodium distachyon BRADI2G50190 I 0.872
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.831
Cagra.0007s0045 Capsella grandiflora Cagra.0007s0045 I 0.879
Cagra.1472s0007 Capsella grandiflora Cagra.1472s0007 I 0.873
Cagra.2527s0006 Capsella grandiflora Cagra.2527s0006 I 0.886
Cagra.2935s0020 Capsella grandiflora Cagra.2935s0020 I 0.833
Carubv10005003m.g Capsella rubella Carubv10005003m.g I 0.833
Carubv10009348m.g Capsella rubella Carubv10009348m.g I 0.873
Carubv10013851m.g Capsella rubella Carubv10013851m.g I 0.877
Carubv10023502m.g Capsella rubella Carubv10023502m.g I 0.887
cassava19177.valid.m1 Manihot esculenta cassava19177.valid.m1 I 0.889
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.830
cassava35669.valid.m1 Manihot esculenta cassava35669.valid.m1 I 0.872
cassava35945.valid.m1 Manihot esculenta cassava35945.valid.m1 I 0.875
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.825
Ca_02473 Cicer arietinum Ca_02473 I 0.878
Ca_11295 Cicer arietinum Ca_11295 I 0.846
Ca_12866 Cicer arietinum Ca_12866 I 0.896
Ca_16227 Cicer arietinum Ca_16227 I 0.888
chr3.CM0160.1110.nc Lotus japonicus chr3.CM0160.1110.nc I 0.885
Ciclev10008390m.g Citrus clementina Ciclev10008390m.g I 0.882
Ciclev10015871m.g Citrus clementina Ciclev10015871m.g I 0.905
Cla002460 Citrullus lanatus Cla002460 I 0.893
Cla013734 Citrullus lanatus Cla013734 I 0.860
Cla016530 Citrullus lanatus Cla016530 I 0.888
Cla023702 Citrullus lanatus Cla023702 I 0.923
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.920
Cucsa.273460 Cucumis sativus Cucsa.273460 I 0.893
Cucsa.384890 Cucumis sativus Cucsa.384890 I 0.846
Eucgr.F01204 Eucalyptus grandis Eucgr.F01204 I 0.882
Eucgr.K01089 Eucalyptus grandis Eucgr.K01089 I 0.878
evm.TU.supercontig_131.71 Carica papaya evm.TU.supercontig_131.71 I 0.882
evm.TU.supercontig_17.1 Carica papaya evm.TU.supercontig_17.1 I 0.831
evm.TU.supercontig_209.13 Carica papaya evm.TU.supercontig_209.13 I 0.844
e_gw1.207.98.1 Physcomitrella patens e_gw1.207.98.1 I 0.866
F775_07590 Aegilops tauschii F775_07590 I 0.905
F775_18470 Aegilops tauschii F775_18470 I 0.848
fgenesh1_pg.scaffold_332000019 Physcomitrella patens fgenesh1_pg.scaffold_332000019 I 0.823
TCP3 Arabidopsis lyrata fgenesh2_kg.1__4401__AT1G53230.1 I 0.873
TCP2 Arabidopsis lyrata fgenesh2_kg.7__2455__AT4G18390.1 D 0.857
gene17805-v1.0-hybrid Fragaria vesca gene17805-v1.0-hybrid I 0.886
gene27171-v1.0-hybrid Fragaria vesca gene27171-v1.0-hybrid I 0.895
GLYMA06G34330 Glycine max GLYMA06G34330 I 0.897
GLYMA06G43721 Glycine max GLYMA06G43721 I 0.855
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.837
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.870
GLYMA12G20160 Glycine max GLYMA12G20160 I 0.897
GLYMA12G33640 Glycine max GLYMA12G33640 I 0.862
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.921
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.926
GLYMA13G36840 Glycine max GLYMA13G36840 I 0.891
Gorai.002G064500 Gossypium raimondii Gorai.002G064500 I 0.889
Gorai.009G153900 Gossypium raimondii Gorai.009G153900 I 0.837
Gorai.009G373000 Gossypium raimondii Gorai.009G373000 I 0.890
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.828
Gorai.013G172800 Gossypium raimondii Gorai.013G172800 I 0.891
GRMZM2G015037 Zea mays GRMZM2G015037 I 0.910
GRMZM2G020805 Zea mays GRMZM2G020805 I 0.858
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.840
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.840
GRMZM2G148022 Zea mays GRMZM2G148022 I 0.871
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.932
GSMUA_Achr10G14340_001 Musa acuminata GSMUA_Achr10G14340_001 I 0.878
GSMUA_Achr2G12990_001 Musa acuminata GSMUA_Achr2G12990_001 I 0.829
GSMUA_Achr3G03540_001 Musa acuminata GSMUA_Achr3G03540_001 I 0.879
GSMUA_Achr3G31370_001 Musa acuminata GSMUA_Achr3G31370_001 I 0.847
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.846
GSMUA_Achr5G02530_001 Musa acuminata GSMUA_Achr5G02530_001 I 0.822
GSMUA_Achr5G06660_001 Musa acuminata GSMUA_Achr5G06660_001 I 0.879
GSMUA_Achr6G14430_001 Musa acuminata GSMUA_Achr6G14430_001 I 0.873
GSMUA_Achr7G01160_001 Musa acuminata GSMUA_Achr7G01160_001 I 0.837
GSMUA_Achr7G13980_001 Musa acuminata GSMUA_Achr7G13980_001 I 0.876
GSMUA_Achr7G25320_001 Musa acuminata GSMUA_Achr7G25320_001 I 0.863
GSMUA_Achr8G19990_001 Musa acuminata GSMUA_Achr8G19990_001 I 0.912
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.872
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.873
LPERR01G26900 Leersia perrieri LPERR01G26900 I 0.878
LPERR03G30870 Leersia perrieri LPERR03G30870 I 0.863
LPERR07G02820 Leersia perrieri LPERR07G02820 I 0.843
Lus10000463.g Linum usitatissimum Lus10000463.g I 0.907
Lus10023297.g Linum usitatissimum Lus10023297.g I 0.823
MDP0000130524 Malus domestica MDP0000130524 I 0.847
MDP0000149841 Malus domestica MDP0000149841 I 0.923
MDP0000182310 Malus domestica MDP0000182310 I 0.840
MDP0000184743 Malus domestica MDP0000184743 I 0.900
MDP0000199422 Malus domestica MDP0000199422 I 0.847
MDP0000202241 Malus domestica MDP0000202241 I 0.833
MDP0000243495 Malus domestica MDP0000243495 I 0.904
MDP0000249507 Malus domestica MDP0000249507 I 0.895
MDP0000253526 Malus domestica MDP0000253526 I 0.847
MDP0000259723 Malus domestica MDP0000259723 I 0.840
MDP0000373350 Malus domestica MDP0000373350 I 0.847
MDP0000442611 Malus domestica MDP0000442611 I 0.878
MDP0000617746 Malus domestica MDP0000617746 I 0.847
MDP0000623166 Malus domestica MDP0000623166 N 0.840
MDP0000693146 Malus domestica MDP0000693146 I 0.896
MDP0000916623 Malus domestica MDP0000916623 I 0.865
MDP0000927314 Malus domestica MDP0000927314 I 0.832
mgf002386m Mimulus guttatus mgf002386m I 0.900
mgf017929m Mimulus guttatus mgf017929m I 0.866
mgf021685m Mimulus guttatus mgf021685m I 0.906
mgf024988m Mimulus guttatus mgf024988m I 0.838
MLOC_10214 Hordeum vulgare MLOC_10214 I 0.841
MLOC_12004 Hordeum vulgare MLOC_12004 I 0.902
MLOC_63989 Hordeum vulgare MLOC_63989 I 0.829
MLOC_68285 Hordeum vulgare MLOC_68285 I 0.887
MTR_2g078200 Medicago truncatula MTR_2g078200 I 0.864
MTR_2g090960 Medicago truncatula MTR_2g090960 I 0.881
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.853
MTR_8g463380 Medicago truncatula MTR_8g463380 I 0.889
OBART01G07230 Oryza barthii OBART01G07230 I 0.879
OBART02G32460 Oryza barthii OBART02G32460 I 0.837
OBART05G22490 Oryza barthii OBART05G22490 I 0.843
OBART12G00580 Oryza barthii OBART12G00580 I 0.837
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.879
OGLUM01G35450 Oryza glumaepatula OGLUM01G35450 I 0.879
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.840
OGLUM03G36280 Oryza glumaepatula OGLUM03G36280 I 0.828
OLONG_003082 Oryza longistaminata OLONG_003082 I 0.871
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.921
OMERI03G33790 Oryza meridionalis OMERI03G33790 I 0.826
OMERI07G02020 Oryza meridionalis OMERI07G02020 I 0.860
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.881
ONIVA01G35730 Oryza nivara ONIVA01G35730 I 0.879
ONIVA03G37780 Oryza nivara ONIVA03G37780 I 0.828
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.879
OPUNC01G30360 Oryza punctata OPUNC01G30360 I 0.879
OPUNC07G03260 Oryza punctata OPUNC07G03260 I 0.830
orange1.1g014360m.g Citrus sinensis orange1.1g014360m.g I 0.882
orange1.1g019898m.g Citrus sinensis orange1.1g019898m.g I 0.905
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.879
ORGLA03G0335700 Oryza glaberrima ORGLA03G0335700 I 0.842
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.879
ORUFI01G34460 Oryza rufipogon ORUFI01G34460 I 0.879
ORUFI03G38070 Oryza rufipogon ORUFI03G38070 I 0.826
OS01G0213800 Oryza sativa OS01G0213800 D 0.879
OS01G0755500 Oryza sativa OS01G0755500 I 0.907
PCF6 Oryza sativa OS03G0785800 I 0.826
Pavir.Ba03864 Panicum virgatum Pavir.Ba03864 I 0.853
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.840
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.824
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.876
Pavir.Eb03208 Panicum virgatum Pavir.Eb03208 I 0.871
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.884
Pavir.J07136 Panicum virgatum Pavir.J07136 I 0.871
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.848
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.885
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.822
Pavir.J36433 Panicum virgatum Pavir.J36433 I 0.827
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.837
PGSC0003DMG400009406 Solanum tuberosum PGSC0003DMG400009406 I 0.893
PGSC0003DMG400012396 Solanum tuberosum PGSC0003DMG400012396 I 0.889
PGSC0003DMG400015377 Solanum tuberosum PGSC0003DMG400015377 I 0.900
PGSC0003DMG400022964 Solanum tuberosum PGSC0003DMG400022964 I 0.868
PGSC0003DMG400026626 Solanum tuberosum PGSC0003DMG400026626 I 0.869
PK04257.1 Cannabis sativa PK04257.1 I 0.886
PK10344.1 Cannabis sativa PK10344.1 D 0.825
PK12847.1 Cannabis sativa PK12847.1 I 0.881
PK29658.1 Cannabis sativa PK29658.1 I 0.848
Pm010118 Prunus mume Pm010118 I 0.852
Pm011369 Prunus mume Pm011369 I 0.895
Pm029788 Prunus mume Pm029788 I 0.878
XM_002300382.1 Populus trichocarpa POPTR_0001s38480 I 0.883
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.829
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.829
POPTR_0011s09890 Populus trichocarpa POPTR_0011s09890 I 0.883
POPTR_0013s12370 Populus trichocarpa POPTR_0013s12370 I 0.875
POPTR_0019s12110 Populus trichocarpa POPTR_0019s12110 I 0.875
PRUPE_ppa004661mg Prunus persica PRUPE_ppa004661mg I 0.895
PRUPE_ppa007094mg Prunus persica PRUPE_ppa007094mg I 0.872
PRUPE_ppb024383mg Prunus persica PRUPE_ppb024383mg I 0.863
SapurV1A.0083s0520 Salix purpurea SapurV1A.0083s0520 I 0.882
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.829
SapurV1A.0303s0040 Salix purpurea SapurV1A.0303s0040 I 0.882
SapurV1A.0500s0140 Salix purpurea SapurV1A.0500s0140 I 0.857
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.838
SapurV1A.1073s0050 Salix purpurea SapurV1A.1073s0050 I 0.875
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.838
SapurV1A.2882s0020 Salix purpurea SapurV1A.2882s0020 I 0.875
SapurV1A.5793s0010 Salix purpurea SapurV1A.5793s0010 I 0.875
Sb02g003070 Sorghum bicolor Sb02g003070 I 0.843
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.885
Sb03g034918 Sorghum bicolor Sb03g034918 I 0.873
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.868
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.855
TCP4 Arabidopsis lyrata scaffold_301743.1 D 0.886
TCP10 Arabidopsis lyrata scaffold_401627.1 I 0.907
SELMODRAFT_104521 Selaginella moellendorffii SELMODRAFT_104521 I 0.916
SELMODRAFT_28794 Selaginella moellendorffii SELMODRAFT_28794 I 0.871
SELMODRAFT_29160 Selaginella moellendorffii SELMODRAFT_29160 I 0.873
SELMODRAFT_29162 Selaginella moellendorffii SELMODRAFT_29162 I 0.875
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.889
SELMODRAFT_89227 Selaginella moellendorffii SELMODRAFT_89227 I 0.916
Si002496m.g Setaria italica Si002496m.g I 0.863
Si004293m.g Setaria italica Si004293m.g I 0.876
Si004564m.g Setaria italica Si004564m.g I 0.907
Si022833m.g Setaria italica Si022833m.g I 0.848
Solyc02g077250.2 Solanum lycopersicum Solyc02g077250.2 I 0.870
Solyc05g012840.1 Solanum lycopersicum Solyc05g012840.1 I 0.888
Solyc05g032780.1 Solanum lycopersicum Solyc05g032780.1 I 0.867
Solyc07g053410.2 Solanum lycopersicum Solyc07g053410.2 I 0.919
Solyc07g062680.1 Solanum lycopersicum Solyc07g062680.1 I 0.889
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.826
Solyc10g008780.1 Solanum lycopersicum Solyc10g008780.1 I 0.858
Solyc10g018710.1 Solanum lycopersicum Solyc10g018710.1 I 0.865
Solyc11g045640.1 Solanum lycopersicum Solyc11g045640.1 I 0.868
Solyc12g014140.1 Solanum lycopersicum Solyc12g014140.1 I 0.907
TCM_003652 Theobroma cacao TCM_003652 I 0.881
TCM_031706 Theobroma cacao TCM_031706 I 0.890
Thhalv10011534m.g Eutrema salsugineum Thhalv10011534m.g I 0.877
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.845
Thhalv10016870m.g Eutrema salsugineum Thhalv10016870m.g I 0.880
Thhalv10020786m.g Eutrema salsugineum Thhalv10020786m.g I 0.877
Thhalv10025465m.g Eutrema salsugineum Thhalv10025465m.g I 0.857
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.840
TRAES3BF014900010CFD_g Triticum aestivum TRAES3BF014900010CFD_g I 0.887
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.849
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.849
VIT_10s0003g00870 Vitis vinifera VIT_10s0003g00870 I 0.909
TCP2 Vitis vinifera VIT_10s0003g03910 I 0.832
TCP10 Vitis vinifera VIT_12s0028g02520 I 0.872
VIT_19s0014g01680 Vitis vinifera VIT_19s0014g01680 I 0.885