Bra004097 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra004097 T343766_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.919 0.550
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.918 0.369
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.864 0.396
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004097.1-P TCP 85 233

Links

Other TCP family TFs
Other Brassica rapa TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30026.m001484 Ricinus communis 30026.m001484 I
30054.m000802 Ricinus communis 30054.m000802 I
AMTR_s00040p00209530 Amborella trichopoda AMTR_s00040p00209530 I
AMTR_s00048p00075850 Amborella trichopoda AMTR_s00048p00075850 I
AMTR_s00069p00130920 Amborella trichopoda AMTR_s00069p00130920 I
Aquca_005_00532 Aquilegia coerulea Aquca_005_00532 I
Aquca_017_00542 Aquilegia coerulea Aquca_017_00542 I
HSFA1D Arabidopsis thaliana AT1G32330 I
HSFA1E Arabidopsis thaliana AT3G02990 D
HSFA1A Arabidopsis thaliana AT4G17750 I
HSFA4A Arabidopsis thaliana AT4G18880 D
HSFA4C Arabidopsis thaliana AT5G45710 I
HSFA9 Arabidopsis thaliana AT5G54070 I
BGIOSGA006438 Oryza indica BGIOSGA006438 I
BGIOSGA025247 Oryza indica BGIOSGA025247 I
BGIOSGA031910 Oryza indica BGIOSGA031910 I
Bo01835s010 Brassica oleracea Bo01835s010 N
Bo1g007320 Brassica oleracea Bo1g007320 I
Bo1g017810 Brassica oleracea Bo1g017810 I
Bo1g020010 Brassica oleracea Bo1g020010 I
Bo1g021700 Brassica oleracea Bo1g021700 I
Bo1g155010 Brassica oleracea Bo1g155010 I
Bo2g161830 Brassica oleracea Bo2g161830 I
Bo2g165540 Brassica oleracea Bo2g165540 I
Bo2g165560 Brassica oleracea Bo2g165560 I
Bo3g042080 Brassica oleracea Bo3g042080 I
Bo3g055950 Brassica oleracea Bo3g055950 I
Bo3g157380 Brassica oleracea Bo3g157380 I
Bo4g190160 Brassica oleracea Bo4g190160 I
Bo4g190190 Brassica oleracea Bo4g190190 N
Bo5g048950 Brassica oleracea Bo5g048950 I
Bo5g150300 Brassica oleracea Bo5g150300 I
Bo7g061750 Brassica oleracea Bo7g061750 I
Bo7g106320 Brassica oleracea Bo7g106320 I
Bo9g062710 Brassica oleracea Bo9g062710 I
Bo9g181780 Brassica oleracea Bo9g181780 I
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I
Bostr.19046s0011 Boechera stricta Bostr.19046s0011 I
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I
Bostr.30275s0239 Boechera stricta Bostr.30275s0239 I
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I
Bra000557 Brassica rapa Bra000557 I
Bra001071 Brassica rapa Bra001071 I
Bra002882 Brassica rapa Bra002882 I
Bra009515 Brassica rapa Bra009515 I
Bra012571 Brassica rapa Bra012571 I
Bra013358 Brassica rapa Bra013358 I
Bra013406 Brassica rapa Bra013406 I
Bra013412 Brassica rapa Bra013412 I
Bra016994 Brassica rapa Bra016994 N
Bra016998 Brassica rapa Bra016998 I
Bra017595 Brassica rapa Bra017595 I
Bra020988 Brassica rapa Bra020988 I
Bra021381 Brassica rapa Bra021381 I
Bra022949 Brassica rapa Bra022949 I
Bra023258 Brassica rapa Bra023258 I
Bra029226 Brassica rapa Bra029226 I
Bra030021 Brassica rapa Bra030021 I
Bra032023 Brassica rapa Bra032023 I
Bra040179 Brassica rapa Bra040179 I
BRADI1G05550 Brachypodium distachyon BRADI1G05550 I
BRADI1G08890 Brachypodium distachyon BRADI1G08890 I
BRADI1G74350 Brachypodium distachyon BRADI1G74350 I
BRADI3G26920 Brachypodium distachyon BRADI3G26920 I
BRADI3G43710 Brachypodium distachyon BRADI3G43710 I
Cagra.0796s0014 Capsella grandiflora Cagra.0796s0014 I
Cagra.1194s0002 Capsella grandiflora Cagra.1194s0002 I
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I
Carubv10004840m.g Capsella rubella Carubv10004840m.g I
Carubv10004953m.g Capsella rubella Carubv10004953m.g I
Carubv10013628m.g Capsella rubella Carubv10013628m.g I
Carubv10024599m.g Capsella rubella Carubv10024599m.g I
Carubv10026722m.g Capsella rubella Carubv10026722m.g I
Carubv10027643m.g Capsella rubella Carubv10027643m.g I
cassava14764.m1 Manihot esculenta cassava14764.m1 I
cassava18058.valid.m1 Manihot esculenta cassava18058.valid.m1 I
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I
cassava44107.valid.m1 Manihot esculenta cassava44107.valid.m1 I
cassava44108.valid.m1 Manihot esculenta cassava44108.valid.m1 I
Ca_00428 Cicer arietinum Ca_00428 I
Ca_08627 Cicer arietinum Ca_08627 I
Ca_10406 Cicer arietinum Ca_10406 I
Ca_11487 Cicer arietinum Ca_11487 I
CHLREDRAFT_117914 Chlamydomonas reinhardtii CHLREDRAFT_117914 I
chr4.CM0046.500.nc Lotus japonicus chr4.CM0046.500.nc I
chr5.CM0359.140.nc Lotus japonicus chr5.CM0359.140.nc I
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I
Cla007462 Citrullus lanatus Cla007462 I
Cla008974 Citrullus lanatus Cla008974 I
CML277C Cyanidioschyzon merolae CML277C I
Cucsa.212820 Cucumis sativus Cucsa.212820 I
Cucsa.321980 Cucumis sativus Cucsa.321980 I
Cucsa.355680 Cucumis sativus Cucsa.355680 I
HSF4 Cavia porcellus ENSCPOG00000010834 I
estExt_Genewise1.C_310312 Physcomitrella patens estExt_Genewise1.C_310312 I
estExt_Genewise1.C_840063 Physcomitrella patens estExt_Genewise1.C_840063 I
Eucgr.A01948 Eucalyptus grandis Eucgr.A01948 I
Eucgr.C03454 Eucalyptus grandis Eucgr.C03454 I
Eucgr.C03456 Eucalyptus grandis Eucgr.C03456 I
Eucgr.C03457 Eucalyptus grandis Eucgr.C03457 I
Eucgr.E00253 Eucalyptus grandis Eucgr.E00253 I
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I
Eucgr.K03325 Eucalyptus grandis Eucgr.K03325 I
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I
evm.TU.supercontig_50.58 Carica papaya evm.TU.supercontig_50.58 I
evm.TU.supercontig_90.16 Carica papaya evm.TU.supercontig_90.16 I
e_gw1.6.1274.1 Mucor circinelloides e_gw1.6.1274.1 I
F775_00937 Aegilops tauschii F775_00937 I
F775_19394 Aegilops tauschii F775_19394 I
ATHSFA1D Arabidopsis lyrata fgenesh2_kg.1__3374__AT1G32330.1 I
ATHSFA1E Arabidopsis lyrata fgenesh2_kg.3__246__AT3G02990.1 I
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I
gene13904-v1.0-hybrid Fragaria vesca gene13904-v1.0-hybrid I
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I
GLYMA01G01990 Glycine max GLYMA01G01990 I
GLYMA05G29470 Glycine max GLYMA05G29470 I
GLYMA08G12630 Glycine max GLYMA08G12630 I
GLYMA09G33920 Glycine max GLYMA09G33920 I
GLYMA10G00560 Glycine max GLYMA10G00560 I
GLYMA10G07620 Glycine max GLYMA10G07620 I
GLYMA14G11030 Glycine max GLYMA14G11030 I
GLYMA16G13400 Glycine max GLYMA16G13400 I
Gorai.003G183900 Gossypium raimondii Gorai.003G183900 I
Gorai.004G257000 Gossypium raimondii Gorai.004G257000 I
Gorai.006G224000 Gossypium raimondii Gorai.006G224000 I
Gorai.007G033300 Gossypium raimondii Gorai.007G033300 I
Gorai.008G225200 Gossypium raimondii Gorai.008G225200 I
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I
Gorai.012G044200 Gossypium raimondii Gorai.012G044200 I
Gorai.013G183500 Gossypium raimondii Gorai.013G183500 I
Gorai.013G220400 Gossypium raimondii Gorai.013G220400 I
GRMZM2G026742 Zea mays GRMZM2G026742 I
GRMZM2G118485 Zea mays GRMZM2G118485 I
GRMZM2G125969 Zea mays GRMZM2G125969 I
GRMZM2G179802 Zea mays GRMZM2G179802 I
GSMUA_Achr3G06020_001 Musa acuminata GSMUA_Achr3G06020_001 I
GSMUA_Achr4G17040_001 Musa acuminata GSMUA_Achr4G17040_001 I
GSMUA_Achr6G24430_001 Musa acuminata GSMUA_Achr6G24430_001 I
gw1.207.102.1 Physcomitrella patens gw1.207.102.1 I
LPERR02G13860 Leersia perrieri LPERR02G13860 I
LPERR03G04120 Leersia perrieri LPERR03G04120 I
LPERR10G07380 Leersia perrieri LPERR10G07380 I
Lus10000312.g Linum usitatissimum Lus10000312.g I
Lus10005420.g Linum usitatissimum Lus10005420.g I
Lus10007318.g Linum usitatissimum Lus10007318.g I
Lus10011065.g Linum usitatissimum Lus10011065.g I
Lus10015237.g Linum usitatissimum Lus10015237.g I
Lus10016634.g Linum usitatissimum Lus10016634.g I
Lus10022083.g Linum usitatissimum Lus10022083.g I
Lus10029269.g Linum usitatissimum Lus10029269.g I
Lus10030956.g Linum usitatissimum Lus10030956.g I
Lus10040091.g Linum usitatissimum Lus10040091.g I
MDP0000126826 Malus domestica MDP0000126826 I
MDP0000156337 Malus domestica MDP0000156337 I
MDP0000263056 Malus domestica MDP0000263056 I
mgf006143m Mimulus guttatus mgf006143m I
mgf006947m Mimulus guttatus mgf006947m I
mgf009243m Mimulus guttatus mgf009243m I
MLOC_498 Hordeum vulgare MLOC_498 I
MLOC_6206 Hordeum vulgare MLOC_6206 I
MLOC_75519 Hordeum vulgare MLOC_75519 I
MTR_2g100670 Medicago truncatula MTR_2g100670 I
MTR_2g100680 Medicago truncatula MTR_2g100680 I
MTR_5g029680 Medicago truncatula MTR_5g029680 I
MTR_6g043060 Medicago truncatula MTR_6g043060 I
MTR_8g083100 Medicago truncatula MTR_8g083100 I
MTR_8g087540 Medicago truncatula MTR_8g087540 I
MTR_8g105780 Medicago truncatula MTR_8g105780 I
OB03G14700 Oryza brachyantha OB03G14700 I
OB03G44190 Oryza brachyantha OB03G44190 I
OB10G18020 Oryza brachyantha OB10G18020 I
OBART07G04960 Oryza barthii OBART07G04960 I
OBART10G10150 Oryza barthii OBART10G10150 I
OGLUM02G17550 Oryza glumaepatula OGLUM02G17550 I
OGLUM07G04480 Oryza glumaepatula OGLUM07G04480 I
OGLUM10G10060 Oryza glumaepatula OGLUM10G10060 I
OLONG_011402 Oryza longistaminata OLONG_011402 I
OLONG_017397 Oryza longistaminata OLONG_017397 I
OMERI02G17330 Oryza meridionalis OMERI02G17330 I
OMERI07G03500 Oryza meridionalis OMERI07G03500 I
OMERI10G07540 Oryza meridionalis OMERI10G07540 I
ONIVA02G18700 Oryza nivara ONIVA02G18700 I
ONIVA07G03730 Oryza nivara ONIVA07G03730 I
ONIVA10G09550 Oryza nivara ONIVA10G09550 I
OPUNC02G15430 Oryza punctata OPUNC02G15430 I
OPUNC03G04310 Oryza punctata OPUNC03G04310 I
OPUNC07G04790 Oryza punctata OPUNC07G04790 I
OPUNC10G08860 Oryza punctata OPUNC10G08860 I
orange1.1g010166m.g Citrus sinensis orange1.1g010166m.g I
orange1.1g011077m.g Citrus sinensis orange1.1g011077m.g I
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I
ORGLA07G0042500 Oryza glaberrima ORGLA07G0042500 I
ORGLA10G0088100 Oryza glaberrima ORGLA10G0088100 I
ORUFI02G18130 Oryza rufipogon ORUFI02G18130 I
ORUFI07G04770 Oryza rufipogon ORUFI07G04770 I
ORUFI10G10710 Oryza rufipogon ORUFI10G10710 I
HSFA5 Oryza sativa OS02G0496100 I
HSFA2B Oryza sativa OS07G0178600 I
HSFA2C Oryza sativa OS10G0419300 I
Pavir.Ba03710 Panicum virgatum Pavir.Ba03710 I
Pavir.Ib00391 Panicum virgatum Pavir.Ib00391 I
Pavir.Ib03391 Panicum virgatum Pavir.Ib03391 I
Pavir.J15979 Panicum virgatum Pavir.J15979 I
Pavir.J18081 Panicum virgatum Pavir.J18081 I
PDK_20s1342122g001 Phoenix dactylifera PDK_20s1342122g001 I
PGSC0003DMG400014811 Solanum tuberosum PGSC0003DMG400014811 I
PGSC0003DMG400017846 Solanum tuberosum PGSC0003DMG400017846 I
PGSC0003DMG400027036 Solanum tuberosum PGSC0003DMG400027036 I
PGSC0003DMG400028414 Solanum tuberosum PGSC0003DMG400028414 I
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I
PK05866.1 Cannabis sativa PK05866.1 I
PK09831.1 Cannabis sativa PK09831.1 I
PK12544.1 Cannabis sativa PK12544.1 I
PK25112.1 Cannabis sativa PK25112.1 I
Pm010169 Prunus mume Pm010169 I
Pm011227 Prunus mume Pm011227 I
Pm023178 Prunus mume Pm023178 I
POPTR_0003s09370 Populus trichocarpa POPTR_0003s09370 I
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I
POPTR_0013s07740 Populus trichocarpa POPTR_0013s07740 I
POPTR_0014s13780 Populus trichocarpa POPTR_0014s13780 I
PRUPE_ppa004559mg Prunus persica PRUPE_ppa004559mg I
PRUPE_ppa004782mg Prunus persica PRUPE_ppa004782mg I
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I
SapurV1A.0015s0620 Salix purpurea SapurV1A.0015s0620 I
SapurV1A.0151s0340 Salix purpurea SapurV1A.0151s0340 I
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I
SapurV1A.0182s0110 Salix purpurea SapurV1A.0182s0110 I
SapurV1A.0208s0230 Salix purpurea SapurV1A.0208s0230 I
SapurV1A.0852s0050 Salix purpurea SapurV1A.0852s0050 I
SapurV1A.3823s0010 Salix purpurea SapurV1A.3823s0010 I
Sb01g005250 Sorghum bicolor Sb01g005250 I
Sb01g008380 Sorghum bicolor Sb01g008380 I
Sb01g021490 Sorghum bicolor Sb01g021490 I
Sb01g042370 Sorghum bicolor Sb01g042370 I
Sb02g004370 Sorghum bicolor Sb02g004370 I
Sb04g020050 Sorghum bicolor Sb04g020050 I
scaffold_201202.1 Arabidopsis lyrata scaffold_201202.1 I
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I
SELMODRAFT_126488 Selaginella moellendorffii SELMODRAFT_126488 I
SELMODRAFT_15442 Selaginella moellendorffii SELMODRAFT_15442 I
SELMODRAFT_37324 Selaginella moellendorffii SELMODRAFT_37324 I
SELMODRAFT_39381 Selaginella moellendorffii SELMODRAFT_39381 I
SELMODRAFT_39384 Selaginella moellendorffii SELMODRAFT_39384 I
Si019082m.g Setaria italica Si019082m.g I
Si030256m.g Setaria italica Si030256m.g I
Si035840m.g Setaria italica Si035840m.g I
Si036148m.g Setaria italica Si036148m.g I
Si036304m.g Setaria italica Si036304m.g I
Si036486m.g Setaria italica Si036486m.g I
Si038907m.g Setaria italica Si038907m.g I
Solyc02g072000.2 Solanum lycopersicum Solyc02g072000.2 I
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I
Solyc06g072750.2 Solanum lycopersicum Solyc06g072750.2 I
Solyc08g005170.2 Solanum lycopersicum Solyc08g005170.2 I
Solyc08g076590.2 Solanum lycopersicum Solyc08g076590.2 I
Solyc09g082670.2 Solanum lycopersicum Solyc09g082670.2 I
TCM_016563 Theobroma cacao TCM_016563 I
TCM_025482 Theobroma cacao TCM_025482 I
TCM_029630 Theobroma cacao TCM_029630 I
Thhalv10000950m.g Eutrema salsugineum Thhalv10000950m.g I
Thhalv10025116m.g Eutrema salsugineum Thhalv10025116m.g I
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I
TRAES3BF002300100CFD_g Triticum aestivum TRAES3BF002300100CFD_g I
Traes_4BL_2E125A702 Triticum aestivum Traes_4BL_2E125A702 I
Traes_6AS_1537629B3 Triticum aestivum Traes_6AS_1537629B3 I
Traes_6DS_C59B6322F Triticum aestivum Traes_6DS_C59B6322F I
TRIUR3_02308 Triticum urartu TRIUR3_02308 I
TRIUR3_11025 Triticum urartu TRIUR3_11025 I
VIT_00s0179g00150 Vitis vinifera VIT_00s0179g00150 I
VIT_05s0020g04090 Vitis vinifera VIT_05s0020g04090 I
AT-HSFA3 Vitis vinifera VIT_08s0007g03900 I
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I
VIT_12s0028g01410 Vitis vinifera VIT_12s0028g01410 I
VIT_16s0039g01840 Vitis vinifera VIT_16s0039g01840 I