CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Fa00930
(
Panicum virgatum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Pavir.Fa00930
T345001_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fa00930.1.p
TCP
5
109
GSTYIPWSKVTETVPQGIQVPMCFCGSLCKLMKSRAPPPLCDFLQWLDTEQSQQDKNHMEEKRKKNQEEIQKKIAEVERQKAEEREADRERKRERARRAKEAGSE
Links
Other
TCP
family TFs
Other
Panicum virgatum
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGLB003577
Biomphalaria glabrata
BGLB003577
N
0.924
Bra032973
Brassica rapa
Bra032973
N
0.833
CAOG_03637
Capsaspora owczarzaki
CAOG_03637
N
0.915
Ca_24979
Cicer arietinum
Ca_24979
N
0.841
CGOC_0000468301
Cylicostephanus goldi
CGOC_0000468301
N
0.928
TRIM56
Anolis carolinensis
ENSACAG00000007859
N
0.835
BLOC1S6
Loxodonta africana
ENSLAFG00000000655
N
0.913
Sec61gl
Rattus norvegicus
ENSRNOG00000049016
N
0.928
Sec61g-ps1
Rattus norvegicus
ENSRNOG00000049451
N
0.928
BLOC1S6
Sorex araneus
ENSSARG00000009861
N
0.912
GF19613
Drosophila ananassae
FBgn0096620
N
0.915
GK18872
Drosophila willistoni
FBgn0220870
N
0.906
GE16904
Drosophila yakuba
FBgn0234394
N
0.889
fgenesh1_pg.C_scaffold_4001082
Cryphonectria parasitica
fgenesh1_pg.C_scaffold_4001082
N
0.929
fgenesh2_pg.scaffold_12000136
Monosiga brevicollis
fgenesh2_pg.scaffold_12000136
N
0.917
H311_00925
Anncaliia algerae
H311_00925
N
0.926
Hsal_00106--NA
Harpegnathos saltator
Hsal_00106--NA
N
0.927
JL09_g6305
Pichia kudriavzevii
JL09_g6305
N
0.929
Lus10019949.g
Linum usitatissimum
Lus10019949.g
N
0.878
Lus10042195.g
Linum usitatissimum
Lus10042195.g
N
0.860
OLONG_002570
Oryza longistaminata
OLONG_002570
I
0.928
ORUFI11G04600
Oryza rufipogon
ORUFI11G04600
N
0.926
ORUFI12G05060
Oryza rufipogon
ORUFI12G05060
N
0.918
PVAR5_0486
Byssochlamys spectabilis
PVAR5_0486
N
0.926
TRIUR3_02266
Triticum urartu
TRIUR3_02266
N
0.928
TRIUR3_03984
Triticum urartu
TRIUR3_03984
N
0.827
ZBAI_00205
Zygosaccharomyces bailii
ZBAI_00205
N
0.932