CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GLYMA01G44670 *(Glycine max)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	GLYMA01G44670	T345395_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.961
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.961
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.961
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.934
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.934
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.934
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.934
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.895
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.882
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.763
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.671
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.632
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.605
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.605
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.605
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.605
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.605
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.579
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.579
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.566
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.566
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.566
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.566
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.566
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.566
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.553
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.539
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.539
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GLYMA01G44670.1	TCR/CxC	485	522	CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP
GLYMA01G44670.1	TCR/CxC	571	608	KRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAF
GLYMA01G44670.2	TCR/CxC	470	507	CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP
GLYMA01G44670.2	TCR/CxC	556	593	KRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAF

Links
Other TCR/CxC family TFs
Other *Glycine max* TFs

1214 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
13508_YKL043W	Saccharomyces mikatae	13508_YKL043W	I
13647_YKL043W	Saccharomyces paradoxus	13647_YKL043W	I
14607_YKL043W	Saccharomyces bayanus	14607_YKL043W	I
16462_YMR016C	Saccharomyces mikatae	16462_YMR016C	I
17269_YMR016C	Saccharomyces paradoxus	17269_YMR016C	I
17689_YMR016C	Saccharomyces bayanus	17689_YMR016C	I
AACERI_AaceriABR055C	Saccharomycetaceae sp ashbya aceri	AACERI_AaceriABR055C	I
AGOS_ABR055C	Ashbya gossypii	AGOS_ABR055C	I
BN7_6724	Wickerhamomyces ciferrii	BN7_6724	I
CAGL0L01771g	Candida glabrata	CAGL0L01771g	I
CaO19.610	Candida albicans	CaO19.610	I
CaO19.8243	Candida albicans	CaO19.8243	I
CD36_33560	Candida dubliniensis	CD36_33560	I
CLUG_02047	Clavispora lusitaniae	CLUG_02047	I
CLUG_02047	Candida lusitaniae	CLUG_02047	I
CORT_0G01760	Candida orthopsilosis	CORT_0G01760	I
CPAG_00178	Candida parapsilosis	CPAG_00178	I
DEHA2E10978g	Debaryomyces hansenii	DEHA2E10978g	I
Ecym_4584	Eremothecium cymbalariae	Ecym_4584	I
estExt_fgenesh1_pg.C_chr_3.10654	Pichia stipitis	estExt_fgenesh1_pg.C_chr_3.10654	I
EV44_g0662	Erysiphe necator	EV44_g0662	I
G210_4810	Candida maltosa	G210_4810	I
GNLVRS01_PISO0E14370g	Millerozyma farinosa	GNLVRS01_PISO0E14370g	I
GNLVRS01_PISO0F15757g	Millerozyma farinosa	GNLVRS01_PISO0F15757g	I
HPODL_01835	Ogataea parapolymorpha	HPODL_01835	I
HPODL_04965	Ogataea parapolymorpha	HPODL_04965	I
JL09_g3139	Pichia kudriavzevii	JL09_g3139	I
KAFR_0A02120	Kazachstania africana	KAFR_0A02120	I
KAFR_0B01410	Kazachstania africana	KAFR_0B01410	I
KLLA0_F04840g	Kluyveromyces lactis	KLLA0_F04840g	I
KLTH0D07876g	Lachancea thermotolerans	KLTH0D07876g	I
KLTH0D07876g	Kluyveromyces thermotolerans	KLTH0D07876g	I
KUCA_T00004103001	Kuraishia capsulata	KUCA_T00004103001	I
Kwal_8176	Kluyveromyces waltii	Kwal_8176	I
LALA0_S02e00628g	Lachancea lanzarotensis	LALA0_S02e00628g	I
LELG_05390	Lodderomyces elongisporus	LELG_05390	I
NCAS_0A04710	Naumovozyma castellii	NCAS_0A04710	I
PGUG_03651	Candida guilliermondii	PGUG_03651	I
PGUG_03651	Meyerozyma guilliermondii	PGUG_03651	I
PICST_67427	Scheffersomyces stipitis	PICST_67427	I
SAKL0D13442g	Lachancea kluyveri	SAKL0D13442g	I
Scas_Contig625.8	Saccharomyces castellii	Scas_Contig625.8	I
SKUD_205409	Saccharomyces kudriavzevii	SKUD_205409	I
SKUD_205603	Saccharomyces kudriavzevii	SKUD_205603	I
SPAPADRAFT_59209	Spathaspora passalidarum	SPAPADRAFT_59209	I
SU7_2011	Saccharomyces arboricola	SU7_2011	I
SU7_2504	Saccharomyces arboricola	SU7_2504	I
TDEL_0B06530	Torulaspora delbrueckii	TDEL_0B06530	I
XP_002490663.1	Pichia pastoris	XP_002490663.1	I
YALI0_B19602g	Yarrowia lipolytica	YALI0_B19602g	I
PHD1	Saccharomyces cerevisiae	YKL043W	D
SOK2	Saccharomyces cerevisiae	YMR016C	D
ZBAI_03487	Zygosaccharomyces bailii	ZBAI_03487	I
ZBAI_08486	Zygosaccharomyces bailii	ZBAI_08486	I
ZYRO0E06248g	Zygosaccharomyces rouxii	ZYRO0E06248g	I

GLYMA01G44670 (Glycine max) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1214 Related TFs

GLYMA01G44670 **(Glycine max)
TCR/CxC**