AtGRF9 (Arabidopsis lyrata)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF08879 (WRC) IPR014977 fgenesh1_pm.C_scaffold_4002259 T350809_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRF9
M07370_2.00 		Arabidopsis thaliana
NTGTCAGANNHNNVH
DBNNDNNTCTGACAN		 Dap-seq
OMalley et al.(2016)
GRF9_col_a 		0.929 0.929
GRF9
M07371_2.00 		Arabidopsis thaliana
TGTCAGAN
NTCTGACA		 Dap-seq
OMalley et al.(2016)
GRF9_colamp_a 		0.929 0.929
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_4002259 WRC 90 132
fgenesh1_pm.C_scaffold_4002259 WRC 312 353

Links

Other WRC family TFs
Other Arabidopsis lyrata TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRF9 Arabidopsis thaliana AT2G45480 D 0.929
Bo4g195580 Brassica oleracea Bo4g195580 I 0.859
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I 0.953
Bra039334 Brassica rapa Bra039334 I 0.847
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I 0.953
Carubv10023501m.g Capsella rubella Carubv10023501m.g I 0.953
cassava28657.m1 Manihot esculenta cassava28657.m1 I 0.706
Ca_19588 Cicer arietinum Ca_19588 I 0.706
PK07653.1 Cannabis sativa PK07653.1 I 0.729
TCM_005483 Theobroma cacao TCM_005483 I 0.706
Thhalv10001460m.g Eutrema salsugineum Thhalv10001460m.g I 0.929
AtGRF9 Vitis vinifera VIT_15s0048g01740 I 0.718