cassava28657.m1 (Manihot esculenta)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 cassava28657.m1 T351442_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRF9
M07370_2.00 		Arabidopsis thaliana
NTGTCAGANNHNNVH
DBNNDNNTCTGACAN		 Dap-seq
OMalley et al.(2016)
GRF9_col_a 		0.706 0.706
GRF9
M07371_2.00 		Arabidopsis thaliana
TGTCAGAN
NTCTGACA		 Dap-seq
OMalley et al.(2016)
GRF9_colamp_a 		0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava28657.m1 WRC 101 143
cassava28657.m1 WRC 306 347

Links

Other WRC family TFs
Other Manihot esculenta TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava36905.valid.m1 Manihot esculenta cassava36905.valid.m1 N 0.847
30174.m008910 Ricinus communis 30174.m008910 N 0.812
TCM_005483 Theobroma cacao TCM_005483 I 0.800
PK07653.1 Cannabis sativa PK07653.1 I 0.800
POPTR_0014s06750 Populus trichocarpa POPTR_0014s06750 I 0.788
AtGRF9 Vitis vinifera VIT_15s0048g01740 I 0.788
SapurV1A.0532s0070 Salix purpurea SapurV1A.0532s0070 N 0.788
PRUPE_ppa021277mg Prunus persica PRUPE_ppa021277mg N 0.776
Pm017948 Prunus mume Pm017948 N 0.776
Gorai.007G092400 Gossypium raimondii Gorai.007G092400 N 0.776
Cucsa.257800 Cucumis sativus Cucsa.257800 N 0.765
Cla021612 Citrullus lanatus Cla021612 N 0.753
MDP0000204597 Malus domestica MDP0000204597 N 0.753
GLYMA01G34650 Glycine max GLYMA01G34650 N 0.729
GLYMA03G02500 Glycine max GLYMA03G02500 N 0.729
Lus10009234.g Linum usitatissimum Lus10009234.g N 0.729
Lus10038002.g Linum usitatissimum Lus10038002.g N 0.729
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I 0.718
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I 0.718
Carubv10023501m.g Capsella rubella Carubv10023501m.g I 0.718
GRF9 Arabidopsis thaliana AT2G45480 D 0.706
Bo4g195580 Brassica oleracea Bo4g195580 I 0.706
Bra039334 Brassica rapa Bra039334 I 0.706
AtGRF9 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002259 I 0.706
MTR_8g035910 Medicago truncatula MTR_8g035910 N 0.706
PGSC0003DMG400012767 Solanum tuberosum PGSC0003DMG400012767 N 0.706
Solyc01g091540.1 Solanum lycopersicum Solyc01g091540.1 N 0.706
Ca_19588 Cicer arietinum Ca_19588 I 0.706