Pavir.J27870 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.J27870 T356850_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.C_Chr_11.0001000193
M02570_2.00 		Ostreococcus tauri
NRGTCARNN
NNYTGACYN		 PBM
Weirauch et al.(2014)
pTH9432 		0.822 0.534
WRKY48
M02565_2.00 		Arabidopsis thaliana
NNVGTCADNN
NNHTGACBNN		 PBM
Weirauch et al.(2014)
pTH7552 		0.822 0.586
ZAP1
M00982_2.00 		Arabidopsis thaliana
NRGTCAAN
NTTGACYN		 PBM
Lindemose et al.(2014)
WRKY1 		0.821 0.552
WRKY71
M07374_2.00 		Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY71_col_a 		0.820 0.621
WRKY28
M07406_2.00 		Arabidopsis thaliana
HAAAGTCAAMNNH
DNNKTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY28_col_a 		0.820 0.603
WRKY28
M07407_2.00 		Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB		 Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a 		0.820 0.603
WRKY8
M02564_2.00 		Arabidopsis thaliana
NRGTCAAHN
NDTTGACYN		 PBM
Weirauch et al.(2014)
pTH7554 		0.820 0.586
WRKY8
M07428_2.00 		Arabidopsis thaliana
NAAAAGTCAACRNHW
WDNYGTTGACTTTTN		 Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a 		0.820 0.586
WRKY8
M07429_2.00 		Arabidopsis thaliana
NNVAAAGTCAACRNH
DNYGTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY8_col 		0.820 0.586
WRKY24
M07426_2.00 		Arabidopsis thaliana
NNNAWAGTCAACGN
NCGTTGACTWTNNN		 Dap-seq
OMalley et al.(2016)
WRKY24_col_a 		0.819 0.569
WRKY24
M07427_2.00 		Arabidopsis thaliana
NAWAGTCAACGNH
DNCGTTGACTWTN		 Dap-seq
OMalley et al.(2016)
WRKY24_colamp_a 		0.819 0.569
WRKY75
M02562_2.00 		Arabidopsis thaliana
NRGTCAAM
KTTGACYN		 PBM
Weirauch et al.(2014)
pTH8821 		0.814 0.534
WRKY75
M07420_2.00 		Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY75_col_a 		0.814 0.534
WRKY75
M07421_2.00 		Arabidopsis thaliana
VAAAGTCAACRNH
DNYGTTGACTTTB		 Dap-seq
OMalley et al.(2016)
WRKY75_colamp_a 		0.814 0.534
WRKY27
M02566_2.00 		Arabidopsis thaliana
NNGTCHDNN
NNHDGACNN		 PBM
Weirauch et al.(2014)
pTH8188 		0.813 0.500
WRKY27
M07430_2.00 		Arabidopsis thaliana
MAAAGTCAACKNH
DNMGTTGACTTTK		 Dap-seq
OMalley et al.(2016)
WRKY27_col_a 		0.813 0.500
WRKY27
M07431_2.00 		Arabidopsis thaliana
HAAAGTCAACKNH
DNMGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY27_colamp_a 		0.813 0.500
WRKY65
M07372_2.00 		Arabidopsis thaliana
NWWAGTCAACG
CGTTGACTWWN		 Dap-seq
OMalley et al.(2016)
WRKY65_col_a 		0.812 0.500
WRKY65
M07373_2.00 		Arabidopsis thaliana
NAAAGTCAACGN
NCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY65_colamp_a 		0.812 0.500
WRKY14
M00731_2.00 		Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN		 PBM
Chang et al.(2013)
pTH7570 		0.811 0.517
WRKY14
M07375_2.00 		Arabidopsis thaliana
NAAAGTCAACGNN
NNCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY14_col_a 		0.811 0.517
WRKY14
M07376_2.00 		Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY14_colamp_a 		0.811 0.517
WRKY23
M02556_2.00 		Arabidopsis thaliana
RGTCAACG
CGTTGACY		 PBM
Weirauch et al.(2014)
pTH7387 		0.811 0.586
WRKY23
M01089_2.00 		Arabidopsis thaliana
NRGTCAAM
KTTGACYN		 PBM
Sullivan et al.(2014)
pTH7671 		0.811 0.586
WRKY57
M02547_2.00 		Arabidopsis thaliana
NNRGTCAAHN
NDTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7917 		0.811 0.586
WRKY12
M00898_2.00 		Arabidopsis thaliana
NHGGTCAACNN
NNGTTGACCDN		 PBM
Franco-Zorrilla et al.(2014)
WRKY12 		0.809 0.569
WRKY21
M02553_2.00 		Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7422 		0.809 0.517
WRKY21
M07389_2.00 		Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a 		0.809 0.517
WRKY21
M07390_2.00 		Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_col 		0.809 0.517
WRKY22
M02557_2.00 		Arabidopsis thaliana
NNNKTMHDNN
NNHDKAMNNN		 PBM
Weirauch et al.(2014)
pTH7320 		0.808 0.466
WRKY22
M07400_2.00 		Arabidopsis thaliana
AAAAGTCAACKNH
DNMGTTGACTTTT		 Dap-seq
OMalley et al.(2016)
WRKY22_colamp_a 		0.808 0.466
WRKY22
M07401_2.00 		Arabidopsis thaliana
NAAAGTCAACKNH
DNMGTTGACTTTN		 Dap-seq
OMalley et al.(2016)
WRKY22_col 		0.808 0.466
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J27870.1.p WRKY 200 257

Links

Other WRKY family TFs
Other Panicum virgatum TFs

1255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29736.m002013 Ricinus communis 29736.m002013 I
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I
MYB124 Arabidopsis thaliana AT1G14350 D
MYB88 Arabidopsis thaliana AT2G02820 D
BGIOSGA026188 Oryza indica BGIOSGA026188 I
Bo2g136560 Brassica oleracea Bo2g136560 I
Bo5g019500 Brassica oleracea Bo5g019500 I
Bo7g080730 Brassica oleracea Bo7g080730 I
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I
Bra019658 Brassica rapa Bra019658 I
Bra024804 Brassica rapa Bra024804 I
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I
Carubv10011707m.g Capsella rubella Carubv10011707m.g I
Carubv10017119m.g Capsella rubella Carubv10017119m.g I
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I
cassava39089.m1 Manihot esculenta cassava39089.m1 I
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I
Cla010333 Citrullus lanatus Cla010333 I
Cucsa.285270 Cucumis sativus Cucsa.285270 I
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I
GLYMA01G05190 Glycine max GLYMA01G05190 I
GLYMA02G02310 Glycine max GLYMA02G02310 I
GLYMA08G40950 Glycine max GLYMA08G40950 I
GLYMA18G16040 Glycine max GLYMA18G16040 I
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I
GRMZM2G064630 Zea mays GRMZM2G064630 I
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I
Lus10012847.g Linum usitatissimum Lus10012847.g I
Lus10030494.g Linum usitatissimum Lus10030494.g I
MDP0000165523 Malus domestica MDP0000165523 I
MDP0000210970 Malus domestica MDP0000210970 I
mgf009409m Mimulus guttatus mgf009409m I
MTR_5g038910 Medicago truncatula MTR_5g038910 I
MTR_8g468380 Medicago truncatula MTR_8g468380 I
OB07G28520 Oryza brachyantha OB07G28520 I
OBART07G22930 Oryza barthii OBART07G22930 I
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I
OPUNC07G21540 Oryza punctata OPUNC07G21540 I
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I
OS07G0627300 Oryza sativa OS07G0627300 I
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I
Pavir.J36475 Panicum virgatum Pavir.J36475 I
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I
PK05123.1 Cannabis sativa PK05123.1 I
Pm006532 Prunus mume Pm006532 I
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I
Sb02g040050 Sorghum bicolor Sb02g040050 I
Si029124m.g Setaria italica Si029124m.g I
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I
TCM_011776 Theobroma cacao TCM_011776 I
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I