VDBG_06838 (Verticillium albo atrum)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 VDBG_06838 T358030_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANIA_00568
M01347_2.00 		Aspergillus nidulans
NRDWBSCCGV
BCGGSVWHYN		 PBM
Lambert et al.(2019)
pEX0204 		0.546 0.658
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VDBG_06838T0 Zinc cluster 62 99

Links

Other Zinc cluster family TFs
Other Verticillium albo atrum TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004778 Oryza indica BGIOSGA004778 N 0.000
BRADI2G54670 Brachypodium distachyon BRADI2G54670 N 0.000
F775_11164 Aegilops tauschii F775_11164 N 0.000
GRMZM2G157679 Zea mays GRMZM2G157679 N 0.000
LPERR01G31690 Leersia perrieri LPERR01G31690 N 0.000
MLOC_69561 Hordeum vulgare MLOC_69561 N 0.000
OB01G45620 Oryza brachyantha OB01G45620 N 0.000
OBART01G36810 Oryza barthii OBART01G36810 N 0.000
OGLUM01G40820 Oryza glumaepatula OGLUM01G40820 N 0.000
OLONG_023424 Oryza longistaminata OLONG_023424 N 0.000
OMERI01G33930 Oryza meridionalis OMERI01G33930 N 0.000
ONIVA10G04710 Oryza nivara ONIVA10G04710 N 0.000
OPUNC01G35740 Oryza punctata OPUNC01G35740 N 0.000
ORGLA01G0306900 Oryza glaberrima ORGLA01G0306900 N 0.000
ORUFI01G40180 Oryza rufipogon ORUFI01G40180 N 0.000
OS01G0842200 Oryza sativa OS01G0842200 N 0.000
Pavir.Ea03354 Panicum virgatum Pavir.Ea03354 N 0.000
Pavir.Eb03680 Panicum virgatum Pavir.Eb03680 N 0.000
PDK_20s1329542g002 Phoenix dactylifera PDK_20s1329542g002 N 0.000
Sb03g039510 Sorghum bicolor Sb03g039510 N 0.000
Si000234m.g Setaria italica Si000234m.g N 0.000
TRAES3BF090100150CFD_g Triticum aestivum TRAES3BF090100150CFD_g N 0.000
TRAES3BF108400020CFD_g Triticum aestivum TRAES3BF108400020CFD_g N 0.000
Traes_3AL_60B6CD0A5 Triticum aestivum Traes_3AL_60B6CD0A5 N 0.000
Traes_3B_A25F058E5 Triticum aestivum Traes_3B_A25F058E5 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000