CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ea03354
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.Ea03354
T202992_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ea03354.1.p
GRAS
475
845
LETLLIHCAQSVATDDRRGATELLKQIRQHASPNGDGDQRLAYCFANGLEARLAGNGSQIYKSVVMTRFPCTDVLKAYQLYLAACPFKKISHFFANQTIVNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPRLRITGIDTPQPGFRPAERIEETGRYLKDYAQTFNVPFEFQAIPSRFEAVKIEDLHIEKDELLIINCMFRFKTLMEESVVAESPRNMVLNTIRKMNPHMFIHGIMNGSYNAPFFVSRFREALFHYSAIFDMLETNIPRDNEQRLLIETALFGREAMNVISCEGLERMERPETYKQWQVRNQRAGFKQLPINQDIMKRAREKVRCYHKDFIIDEDNKWLLQGWKGRILMALSTWK
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Eb03680
Panicum virgatum
Pavir.Eb03680
N
0.976
Si000234m.g
Setaria italica
Si000234m.g
N
0.954
Sb03g039510
Sorghum bicolor
Sb03g039510
N
0.943
GRMZM2G157679
Zea mays
GRMZM2G157679
N
0.924
OGLUM01G40820
Oryza glumaepatula
OGLUM01G40820
N
0.894
OLONG_023424
Oryza longistaminata
OLONG_023424
N
0.894
OPUNC01G35740
Oryza punctata
OPUNC01G35740
N
0.894
BGIOSGA004778
Oryza indica
BGIOSGA004778
N
0.892
LPERR01G31690
Leersia perrieri
LPERR01G31690
N
0.892
OBART01G36810
Oryza barthii
OBART01G36810
N
0.892
ONIVA10G04710
Oryza nivara
ONIVA10G04710
N
0.892
ORGLA01G0306900
Oryza glaberrima
ORGLA01G0306900
N
0.892
ORUFI01G40180
Oryza rufipogon
ORUFI01G40180
N
0.892
OS01G0842200
Oryza sativa
OS01G0842200
N
0.892
OMERI01G33930
Oryza meridionalis
OMERI01G33930
N
0.889
BRADI2G54670
Brachypodium distachyon
BRADI2G54670
N
0.886
OB01G45620
Oryza brachyantha
OB01G45620
N
0.883
MLOC_69561
Hordeum vulgare
MLOC_69561
N
0.848
F775_11164
Aegilops tauschii
F775_11164
N
0.840
Traes_3AL_60B6CD0A5
Triticum aestivum
Traes_3AL_60B6CD0A5
N
0.840
Traes_3B_A25F058E5
Triticum aestivum
Traes_3B_A25F058E5
N
0.840
TRAES3BF090100150CFD_g
Triticum aestivum
TRAES3BF090100150CFD_g
N
0.840
TRAES3BF108400020CFD_g
Triticum aestivum
TRAES3BF108400020CFD_g
N
0.840
TRIUR3_23165
Triticum urartu
TRIUR3_23165
N
0.840
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.725