Bo6g077880 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g077880 T000864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.684 0.725
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.684 0.725
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.684 0.725
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.677 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g077880.1 AP2 102 153

Links

Other AP2 family TFs
Other Brassica oleracea TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY41 Arabidopsis lyrata fgenesh2_kg.6__3080__AT4G11070.1 I
chr4.CM0025.230.nd Lotus japonicus chr4.CM0025.230.nd I
Thhalv10028794m.g Eutrema salsugineum Thhalv10028794m.g I
SapurV1A.0237s0250 Salix purpurea SapurV1A.0237s0250 I
Pavir.Ca02643 Panicum virgatum Pavir.Ca02643 I
Gorai.004G134600 Gossypium raimondii Gorai.004G134600 I
Eucgr.E00850 Eucalyptus grandis Eucgr.E00850 I
Carubv10001458m.g Capsella rubella Carubv10001458m.g I
Cagra.3839s0004 Capsella grandiflora Cagra.3839s0004 I
Bostr.25463s0219 Boechera stricta Bostr.25463s0219 I
cassava42820.valid.m1 Manihot esculenta cassava42820.valid.m1 I
TCM_016426 Theobroma cacao TCM_016426 I
POPTR_0003s13840 Populus trichocarpa POPTR_0003s13840 I
POPTR_0001s10490 Populus trichocarpa POPTR_0001s10490 I
GSMUA_Achr4G15640_001 Musa acuminata GSMUA_Achr4G15640_001 I
WRKY41 Arabidopsis thaliana AT4G11070 I
fgenesh1_pg.scaffold_236000008 Physcomitrella patens fgenesh1_pg.scaffold_236000008 N
fgenesh1_pg.scaffold_195000041 Physcomitrella patens fgenesh1_pg.scaffold_195000041 N
estExt_fgenesh1_pg.C_840061 Physcomitrella patens estExt_fgenesh1_pg.C_840061 N