Bo6g086320 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g086320 T000867_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.790 0.980
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.790 0.980
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.790 0.980
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.721 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.700 0.837
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g086320.1 AP2 40 91

Links

Other AP2 family TFs
Other Brassica oleracea TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMAC_07447 Sordaria macrospora SMAC_07447 N
MYCFIDRAFT_158158 Pseudocercospora fijiensis MYCFIDRAFT_158158 N
NechaG74381 Fusarium solani NechaG74381 N
PFICI_13726 Pestalotiopsis fici PFICI_13726 N
PODANS_5_4070 Podospora anserina PODANS_5_4070 N
PTRG_10286 Pyrenophora triticirepentis PTRG_10286 N
PTT_13765 Pyrenophora teres PTT_13765 N
PV09_00164 Verruconis gallopava PV09_00164 N
SETTUDRAFT_87447 Setosphaeria turcica SETTUDRAFT_87447 N
HMPREF1624_07083 Sporothrix schenckii HMPREF1624_07083 N
SPBR_06366 Sporothrix brasiliensis SPBR_06366 N
V499_01836 Pseudogymnoascus pannorum V499_01836 N
VDAG_01189 Verticillium dahliae VDAG_01189 N
VDBG_03963 Verticillium alfalfae VDBG_03963 N
gw1.2.32.1 Cochliobolus heterostrophus C5 gw1.2.32.1 N
col-25 Neurospora crassa NCU06068 N
AB00088.1 Alternaria brassicicola AB00088.1 N
SNOG_09876 Stagonospora nodorum SNOG_09876 N
FPSE_11552 Fusarium pseudograminearum FPSE_11552 N
FGRRES_01378 Fusarium graminearum FGRRES_01378 N
FFUJ_01581 Fusarium fujikuroi FFUJ_01581 N
F503_03119 Ophiostoma piceae uamh F503_03119 N
CTHT_0017920 Chaetomium thermophilum CTHT_0017920 N
COCVIDRAFT_32721 Bipolaris victoriae COCVIDRAFT_32721 N
COCSADRAFT_105936 Bipolaris sorokiniana COCSADRAFT_105936 N
COCMIDRAFT_81530 Bipolaris oryzae COCMIDRAFT_81530 N
COCCADRAFT_90976 Bipolaris zeicola COCCADRAFT_90976 N
COCC4DRAFT_87358 Bipolaris maydis COCC4DRAFT_87358 N
CHGG_09798 Chaetomium globosum CHGG_09798 N
CH063_03657 Colletotrichum higginsianum CH063_03657 N
ACRE_028580 Acremonium chrysogenum ACRE_028580 N
A1O9_10082 Exophiala aquamarina A1O9_10082 N
VDBG_03963 Verticillium albo atrum VDBG_03963 N