Bo6g086320 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g086320 T000867_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.790 0.980
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.790 0.980
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.790 0.980
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.721 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.700 0.837
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g086320.1 AP2 40 91

Links

Other AP2 family TFs
Other Brassica oleracea TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra003752 Brassica rapa Bra003752 I 0.800
DREB2D Arabidopsis thaliana AT1G75490 D 0.790
Bo6g119660 Brassica oleracea Bo6g119660 I 0.790
Bra015840 Brassica rapa Bra015840 I 0.790
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.790
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.790
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.790
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.790
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.790
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.783
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.783
Bo2g083920 Brassica oleracea Bo2g083920 I 0.781
Bra008200 Brassica rapa Bra008200 I 0.781
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.775
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.775
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.775
Ca_10770 Cicer arietinum Ca_10770 I 0.775
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.775
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.773
30170.m014115 Ricinus communis 30170.m014115 I 0.771
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.771
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.771
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.771
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.769
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.769
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.767
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.767
Cla021113 Citrullus lanatus Cla021113 I 0.765
Pm006274 Prunus mume Pm006274 I 0.765
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.765
mgf024545m Mimulus guttatus mgf024545m I 0.763
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.762
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.762
MDP0000250924 Malus domestica MDP0000250924 I 0.761
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.760
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.757
TCM_034132 Theobroma cacao TCM_034132 I 0.756
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.756
MDP0000141335 Malus domestica MDP0000141335 I 0.754
MDP0000295902 Malus domestica MDP0000295902 I 0.754
MDP0000250927 Malus domestica MDP0000250927 I 0.749
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.746
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.746
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.741
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.740
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.740
mgf017629m Mimulus guttatus mgf017629m I 0.738
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.734
Pm003634 Prunus mume Pm003634 I 0.731
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.727
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.727
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.727
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.726
Cla022803 Citrullus lanatus Cla022803 I 0.724
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.724
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.723
DREB2G Arabidopsis thaliana AT5G18450 D 0.721
Bo9g155940 Brassica oleracea Bo9g155940 I 0.721
Bra002159 Brassica rapa Bra002159 I 0.721
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.721
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.721
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.721
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.720
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.720
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.716
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.716
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.715
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.714
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.713
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.712
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.707
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.707
TCM_026121 Theobroma cacao TCM_026121 I 0.707
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.706
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.706
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.706
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.702
29680.m001737 Ricinus communis 29680.m001737 I 0.702
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.702
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.702
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.702
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.702
Bo2g016490 Brassica oleracea Bo2g016490 I 0.701
Bra023674 Brassica rapa Bra023674 I 0.701
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.700
PK07402.1 Cannabis sativa PK07402.1 D 0.700
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.698
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.696
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.696
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.696
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.696
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.696
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.695
Cla006713 Citrullus lanatus Cla006713 I 0.695
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.694
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.694
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.693
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.693
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.693
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.693
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.690
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.690
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.689
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.688
Bo3g013160 Brassica oleracea Bo3g013160 I 0.687
Bra006460 Brassica rapa Bra006460 I 0.687
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.686
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.685
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.684
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.684
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.683
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.683
PK08602.1 Cannabis sativa PK08602.1 D 0.683
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.682
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.682
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.682
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.682
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.682
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.682
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.682
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.682
OBART03G05550 Oryza barthii OBART03G05550 I 0.682
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.682
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.682
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.682
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.682
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.682
DREB2E Oryza sativa OS03G0174400 I 0.682
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.682
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.682
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.682
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.682
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.682
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.682
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.681
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.681
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.680
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.680
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.680
29729.m002292 Ricinus communis 29729.m002292 I 0.680
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.680
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.679
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.679
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.679
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.679
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.679
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.679
TCM_024756 Theobroma cacao TCM_024756 I 0.679
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.679
Ca_07264 Cicer arietinum Ca_07264 I 0.679
Pm025865 Prunus mume Pm025865 I 0.679
27810.m000639 Ricinus communis 27810.m000639 I 0.679
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.679
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.679
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.679
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.679
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.679
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.679
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.679
MDP0000153866 Malus domestica MDP0000153866 I 0.679
MDP0000703626 Malus domestica MDP0000703626 I 0.679
MDP0000871361 Malus domestica MDP0000871361 I 0.679
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.679
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.679
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.678
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.678
OB08G30790 Oryza brachyantha OB08G30790 I 0.678
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.678
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.678
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.678
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.678
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.678
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.678
DREB2C Oryza sativa OS08G0565200 I 0.678
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.678
MDP0000223609 Malus domestica MDP0000223609 I 0.678
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.678
PK07829.1 Cannabis sativa PK07829.1 I 0.678