chr1.CM0195.510.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.CM0195.510.nd T010140_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.732 0.898
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.732 0.898
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.732 0.898
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.686 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0195.510.nd AP2 33 84

Links

Other AP2 family TFs
Other Lotus japonicus TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.799
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.799
Cla022803 Citrullus lanatus Cla022803 I 0.783
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.783
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.781
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.777
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.769
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.769
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.769
Ca_10770 Cicer arietinum Ca_10770 I 0.769
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.769
Pm006274 Prunus mume Pm006274 I 0.759
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.759
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.757
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.757
Cla021113 Citrullus lanatus Cla021113 I 0.756
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.754
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.752
30170.m014115 Ricinus communis 30170.m014115 I 0.752
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.752
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.752
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.752
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.750
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.750
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.748
TCM_034132 Theobroma cacao TCM_034132 I 0.747
MDP0000250924 Malus domestica MDP0000250924 I 0.747
mgf024545m Mimulus guttatus mgf024545m I 0.744
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.743
Bo6g086320 Brassica oleracea Bo6g086320 I 0.741
Bra003752 Brassica rapa Bra003752 I 0.741
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.741
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.741
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.741
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.740
TCM_026121 Theobroma cacao TCM_026121 I 0.739
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.739
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.738
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.738
Bo2g083920 Brassica oleracea Bo2g083920 I 0.737
Bra008200 Brassica rapa Bra008200 I 0.737
MDP0000141335 Malus domestica MDP0000141335 I 0.733
MDP0000295902 Malus domestica MDP0000295902 I 0.733
DREB2D Arabidopsis thaliana AT1G75490 D 0.732
Bo6g119660 Brassica oleracea Bo6g119660 I 0.732
Bra015840 Brassica rapa Bra015840 I 0.732
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.732
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.732
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.732
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.732
MDP0000250927 Malus domestica MDP0000250927 I 0.732
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.732
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.720
F775_02345 Aegilops tauschii F775_02345 I 0.719
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.719
Si024059m.g Setaria italica Si024059m.g I 0.719
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.719
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.719
Pavir.J25464 Panicum virgatum Pavir.J25464 I 0.719
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.717
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.716
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.715
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.715
OB08G30790 Oryza brachyantha OB08G30790 I 0.715
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.715
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.715
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.715
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.715
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.715
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.715
DREB2C Oryza sativa OS08G0565200 I 0.715
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.713
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.712
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.712
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.711
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.705
F775_01779 Aegilops tauschii F775_01779 I 0.704
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.702
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.702
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.701
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.699
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.699
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.697
MDP0000147009 Malus domestica MDP0000147009 I 0.697
MDP0000446783 Malus domestica MDP0000446783 I 0.697
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.696
MDP0000165880 Malus domestica MDP0000165880 I 0.696
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.695
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.695
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.695
Pm003634 Prunus mume Pm003634 I 0.695
Pm018989 Prunus mume Pm018989 I 0.695
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.692
TRIUR3_03342 Triticum urartu TRIUR3_03342 N 0.691
mgf017629m Mimulus guttatus mgf017629m I 0.690
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.690
29680.m001737 Ricinus communis 29680.m001737 I 0.688
DREB2G Arabidopsis thaliana AT5G18450 D 0.686
Bo9g155940 Brassica oleracea Bo9g155940 I 0.686
Bra002159 Brassica rapa Bra002159 I 0.686
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.686
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.686
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.686
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.686
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.685
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.681
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.681
F775_32062 Aegilops tauschii F775_32062 I 0.679
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.679
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.679
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.679
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.678
SELMODRAFT_38498 Selaginella moellendorffii SELMODRAFT_38498 N 0.677
SELMODRAFT_38500 Selaginella moellendorffii SELMODRAFT_38500 N 0.677