Bo9g155940 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo9g155940 T000970_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.807 1.000
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.724 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.724 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.724 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.704 0.796
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.695 0.796
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.682 0.776
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.680 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g155940.1 AP2 32 83

Links

Other AP2 family TFs
Other Brassica oleracea TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2G Arabidopsis thaliana AT5G18450 D 0.807
Bra002159 Brassica rapa Bra002159 I 0.807
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.807
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.807
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.807
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.800
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.800
Bo2g016490 Brassica oleracea Bo2g016490 I 0.788
Bra023674 Brassica rapa Bra023674 I 0.788
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.783
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.760
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.756
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.756
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.754
Pm003634 Prunus mume Pm003634 I 0.750
Bo3g013160 Brassica oleracea Bo3g013160 I 0.744
Bra006460 Brassica rapa Bra006460 I 0.744
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.737
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.737
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.735
mgf017629m Mimulus guttatus mgf017629m I 0.734
29680.m001737 Ricinus communis 29680.m001737 I 0.733
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.729
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.727
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.727
MDP0000250924 Malus domestica MDP0000250924 I 0.727
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.726
30170.m014115 Ricinus communis 30170.m014115 I 0.726
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.726
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.726
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.726
Bo2g083920 Brassica oleracea Bo2g083920 I 0.725
Bra008200 Brassica rapa Bra008200 I 0.725
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.725
DREB2D Arabidopsis thaliana AT1G75490 D 0.724
Bo6g119660 Brassica oleracea Bo6g119660 I 0.724
Bra015840 Brassica rapa Bra015840 I 0.724
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.724
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.724
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.724
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.724
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.724
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.724
Pm006274 Prunus mume Pm006274 I 0.723
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.723
mgf024545m Mimulus guttatus mgf024545m I 0.723
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.722
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.722
Cla021113 Citrullus lanatus Cla021113 I 0.722
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.722
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.722
Bo6g086320 Brassica oleracea Bo6g086320 I 0.721
Bra003752 Brassica rapa Bra003752 I 0.721
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.721
MDP0000141335 Malus domestica MDP0000141335 I 0.721
MDP0000295902 Malus domestica MDP0000295902 I 0.721
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.720
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.720
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.720
Ca_10770 Cicer arietinum Ca_10770 I 0.720
Cla006713 Citrullus lanatus Cla006713 I 0.720
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.720
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.719
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.718
TCM_026121 Theobroma cacao TCM_026121 I 0.717
TCM_034132 Theobroma cacao TCM_034132 I 0.717
MDP0000250927 Malus domestica MDP0000250927 I 0.717
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.714
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.713
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.713
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.713
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.712
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.711
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.711
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.711
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.710
29729.m002292 Ricinus communis 29729.m002292 I 0.707
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.707
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.706
PK07829.1 Cannabis sativa PK07829.1 I 0.706
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.705
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.704
PK07402.1 Cannabis sativa PK07402.1 D 0.704
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.702
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.699
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.699
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.698
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.698
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.698
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.697
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.696
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.696
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.696
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.696
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.695
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.695
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.695
PK08602.1 Cannabis sativa PK08602.1 D 0.695
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.694
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.694
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.693
Si002067m.g Setaria italica Si002067m.g I 0.692
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.691
Bo6g073020 Brassica oleracea Bo6g073020 I 0.690
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.690
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.689
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.689
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.689
MDP0000165880 Malus domestica MDP0000165880 I 0.689
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.688
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.688
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.687
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.687
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.686
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.686
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.686
OB08G30790 Oryza brachyantha OB08G30790 I 0.686
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.686
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.686
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.686
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.686
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.686
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.686
DREB2C Oryza sativa OS08G0565200 I 0.686
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.686
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.686
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.685
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.685
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.685
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.685
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.685
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.685
TCM_024756 Theobroma cacao TCM_024756 I 0.685
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.685
Ca_07264 Cicer arietinum Ca_07264 I 0.685
27810.m000639 Ricinus communis 27810.m000639 I 0.685
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.685
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.685
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.685
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.685
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.685
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.685
Cla022803 Citrullus lanatus Cla022803 I 0.684
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.684
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.683
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.683
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.683
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.683
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.682
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.682
F775_05774 Aegilops tauschii F775_05774 I 0.682
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.682
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.682
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.682
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.682
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.682
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.682
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.682
OBART03G05550 Oryza barthii OBART03G05550 I 0.682
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.682
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.682
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.682
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.682
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.682
DREB2E Oryza sativa OS03G0174400 I 0.682
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.682
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.682
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.682
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.682
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.682
Pm018989 Prunus mume Pm018989 I 0.682
MDP0000147009 Malus domestica MDP0000147009 I 0.682
MDP0000446783 Malus domestica MDP0000446783 I 0.682
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.682
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.682
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.681
AT2G40350 Arabidopsis thaliana AT2G40350 I 0.681
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.681
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.681
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.681
DREB2F Arabidopsis thaliana AT3G57600 D 0.680
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.680
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.680
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.680
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.680
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.680
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.680
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.679
OB01G13930 Oryza brachyantha OB01G13930 I 0.679
OBART01G04210 Oryza barthii OBART01G04210 I 0.679
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.679
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.679
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.679
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.679
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.679
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.679
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.679
DREB2A Oryza sativa OS01G0165000 I 0.679
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.679
Cla017778 Citrullus lanatus Cla017778 I 0.679
Pm025865 Prunus mume Pm025865 I 0.679
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.679
MDP0000703626 Malus domestica MDP0000703626 I 0.679
MDP0000871361 Malus domestica MDP0000871361 I 0.679
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.677
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.677
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.677
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.677
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.677