Ciclev10032029m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10032029m.g T008071_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.767 0.918
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.728 0.878
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.681 0.776
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.678 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.678 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.678 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10032029m AP2 78 129

Links

Other AP2 family TFs
Other Citrus clementina TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.817
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.771
PK07402.1 Cannabis sativa PK07402.1 D 0.767
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.760
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.753
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.747
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.746
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.745
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.745
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.745
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.743
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.743
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.743
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.743
Cla006713 Citrullus lanatus Cla006713 I 0.742
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.741
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.741
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.739
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.733
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.730
F775_05774 Aegilops tauschii F775_05774 I 0.728
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.728
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.728
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.728
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.728
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.728
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.727
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.727
29729.m002292 Ricinus communis 29729.m002292 I 0.725
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.723
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.720
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.720
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.719
OB01G13930 Oryza brachyantha OB01G13930 I 0.719
OBART01G04210 Oryza barthii OBART01G04210 I 0.719
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.719
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.719
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.719
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.719
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.719
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.719
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.719
DREB2A Oryza sativa OS01G0165000 I 0.719
Si002067m.g Setaria italica Si002067m.g I 0.719
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.719
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.719
Bo4g190040 Brassica oleracea Bo4g190040 I 0.718
Bra017011 Brassica rapa Bra017011 I 0.718
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.717
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.717
MDP0000290585 Malus domestica MDP0000290585 I 0.717
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.716
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.716
Pm015262 Prunus mume Pm015262 I 0.716
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.714
Pm018989 Prunus mume Pm018989 I 0.714
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.712
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.711
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.711
MDP0000165880 Malus domestica MDP0000165880 I 0.711
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.710
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.710
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.709
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.707
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.705
MDP0000147009 Malus domestica MDP0000147009 I 0.705
MDP0000446783 Malus domestica MDP0000446783 I 0.705
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.700
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.700
MDP0000153866 Malus domestica MDP0000153866 I 0.700
GLYMA02G42960 Glycine max GLYMA02G42960 I 0.699
GLYMA14G06080 Glycine max GLYMA14G06080 I 0.699
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.698
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.697
MDP0000880312 Malus domestica MDP0000880312 I 0.697
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.696
TCM_043302 Theobroma cacao TCM_043302 I 0.696
TCM_043306 Theobroma cacao TCM_043306 I 0.696
TCM_043275 Theobroma cacao TCM_043275 I 0.694
AT2G40350 Arabidopsis thaliana AT2G40350 I 0.693
PK07829.1 Cannabis sativa PK07829.1 I 0.693
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I 0.692
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.690
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I 0.690
Pm003634 Prunus mume Pm003634 I 0.689
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.689
Bo9g177130 Brassica oleracea Bo9g177130 I 0.687
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.687
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.687
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.687
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.686
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.686
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.686
Si022619m.g Setaria italica Si022619m.g I 0.686
Ca_12446 Cicer arietinum Ca_12446 I 0.686
mgf017629m Mimulus guttatus mgf017629m I 0.686
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.686
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.686
GLYMA12G32400 Glycine max GLYMA12G32400 I 0.685
GLYMA13G38030 Glycine max GLYMA13G38030 I 0.685
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.684
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.684
Cla001755 Citrullus lanatus Cla001755 I 0.683
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.683
DREB2G Arabidopsis thaliana AT5G18450 D 0.681
Bo9g155940 Brassica oleracea Bo9g155940 I 0.681
Bra002159 Brassica rapa Bra002159 I 0.681
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.681
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.681
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.681
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.681
mgf007881m Mimulus guttatus mgf007881m I 0.681
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.681
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.681
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.681
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.680
TCM_026121 Theobroma cacao TCM_026121 I 0.679
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.679
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.679
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.679
DREB2D Arabidopsis thaliana AT1G75490 D 0.678
Bo6g086320 Brassica oleracea Bo6g086320 I 0.678
Bo6g119660 Brassica oleracea Bo6g119660 I 0.678
Bra003752 Brassica rapa Bra003752 I 0.678
Bra015840 Brassica rapa Bra015840 I 0.678
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.678
GLYMA12G11150 Glycine max GLYMA12G11150 I 0.678
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.678
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.678
mgf024545m Mimulus guttatus mgf024545m I 0.678
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.678
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.678
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.678
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.678
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.678
Ca_22585 Cicer arietinum Ca_22585 I 0.677