Lus10034902.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10034902.g T008897_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.743 0.860
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.715 0.820
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.780
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.680 0.820
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.679 0.780
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.679 0.780
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.679 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10034902 AP2 73 124

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.854
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.780
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.777
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.771
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.771
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.769
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.767
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.759
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.759
29729.m002292 Ricinus communis 29729.m002292 I 0.755
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.751
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.751
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.747
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.745
PK07402.1 Cannabis sativa PK07402.1 D 0.743
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.742
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I 0.738
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.736
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.735
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.735
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.732
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.732
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.730
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.727
MDP0000153866 Malus domestica MDP0000153866 I 0.727
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.726
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.726
Cla006713 Citrullus lanatus Cla006713 I 0.726
TCM_043302 Theobroma cacao TCM_043302 I 0.724
TCM_043306 Theobroma cacao TCM_043306 I 0.724
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.719
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.719
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.719
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.718
PK07829.1 Cannabis sativa PK07829.1 I 0.718
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.716
F775_05774 Aegilops tauschii F775_05774 I 0.715
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.715
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.715
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.715
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.715
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.715
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.714
OB01G13930 Oryza brachyantha OB01G13930 I 0.714
OBART01G04210 Oryza barthii OBART01G04210 I 0.714
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.714
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.714
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.714
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.714
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.714
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.714
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.714
DREB2A Oryza sativa OS01G0165000 I 0.714
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.714
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.712
Bo4g190040 Brassica oleracea Bo4g190040 I 0.707
Bra017011 Brassica rapa Bra017011 I 0.707
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.707
Bo2g016490 Brassica oleracea Bo2g016490 I 0.706
Bra023674 Brassica rapa Bra023674 I 0.706
Si002067m.g Setaria italica Si002067m.g I 0.706
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.706
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.705
TCM_043275 Theobroma cacao TCM_043275 I 0.704
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.702
Pm018989 Prunus mume Pm018989 I 0.702
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.701
MDP0000290585 Malus domestica MDP0000290585 I 0.701
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.700
Pm015262 Prunus mume Pm015262 I 0.700
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.700
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.698
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.698
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.695
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.695
mgf017629m Mimulus guttatus mgf017629m I 0.694
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.693
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.693
Gorai.013G025100 Gossypium raimondii Gorai.013G025100 N 0.693
MDP0000147009 Malus domestica MDP0000147009 I 0.693
MDP0000165880 Malus domestica MDP0000165880 I 0.693
MDP0000446783 Malus domestica MDP0000446783 I 0.693
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.692
Pm025865 Prunus mume Pm025865 I 0.692
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.692
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.692
MDP0000703626 Malus domestica MDP0000703626 I 0.692
MDP0000871361 Malus domestica MDP0000871361 I 0.692
Si022619m.g Setaria italica Si022619m.g I 0.691
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.691
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.690
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.690
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.690
MDP0000880312 Malus domestica MDP0000880312 I 0.689
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.688
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.687
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.686
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.686
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.686
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.686
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.686
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.686
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.686
OBART03G05550 Oryza barthii OBART03G05550 I 0.686
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.686
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.686
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.686
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.686
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.686
DREB2E Oryza sativa OS03G0174400 I 0.686
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.686
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.686
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.686
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.686
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.686
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.685
MDP0000250924 Malus domestica MDP0000250924 I 0.685
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.683
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.683
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.683
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.683
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.683
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.683
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.683
TCM_024756 Theobroma cacao TCM_024756 I 0.683
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.683
Ca_07264 Cicer arietinum Ca_07264 I 0.683
Pm003634 Prunus mume Pm003634 I 0.683
27810.m000639 Ricinus communis 27810.m000639 I 0.683
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.683
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.683
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.683
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.683
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.683
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.683
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.683
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.683
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.683
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.683
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.683
PK08602.1 Cannabis sativa PK08602.1 D 0.683
Bo9g177130 Brassica oleracea Bo9g177130 I 0.682
Ca_12446 Cicer arietinum Ca_12446 I 0.682
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.682
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.681
mgf007881m Mimulus guttatus mgf007881m I 0.681
F775_32062 Aegilops tauschii F775_32062 I 0.680
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.680
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.680
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.680
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.680
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.680
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.680
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.680
30170.m014115 Ricinus communis 30170.m014115 I 0.680
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.680
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.680
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.680
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.680
DREB2D Arabidopsis thaliana AT1G75490 D 0.679
Bo6g086320 Brassica oleracea Bo6g086320 I 0.679
Bo6g119660 Brassica oleracea Bo6g119660 I 0.679
Bra003752 Brassica rapa Bra003752 I 0.679
Bra015840 Brassica rapa Bra015840 I 0.679
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.679
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.679
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.679
mgf024545m Mimulus guttatus mgf024545m I 0.679
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.679
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.679
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.679
Lus10002855.g Linum usitatissimum Lus10002855.g N 0.679
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.679
BRADI2G29960 Brachypodium distachyon BRADI2G29960 I 0.678
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.678
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.678
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.678
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.678
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.677
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.677
MDP0000250927 Malus domestica MDP0000250927 I 0.677