POPTR_0006s05320 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0006s05320 T004650_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.795 0.940
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.767 0.920
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.684 0.780
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.684 0.780
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.684 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.680 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s05320.1 AP2 28 79

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.812
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.809
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.807
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.807
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.805
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.805
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.805
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.805
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.805
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.805
Ca_07264 Cicer arietinum Ca_07264 I 0.805
27810.m000639 Ricinus communis 27810.m000639 I 0.805
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.805
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.805
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.805
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.805
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.801
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.801
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.801
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.801
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.801
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.801
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.801
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.801
OBART03G05550 Oryza barthii OBART03G05550 I 0.801
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.801
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.801
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.801
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.801
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.801
DREB2E Oryza sativa OS03G0174400 I 0.801
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.801
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.801
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.801
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.799
TCM_024756 Theobroma cacao TCM_024756 I 0.799
Pm025865 Prunus mume Pm025865 I 0.799
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.799
MDP0000703626 Malus domestica MDP0000703626 I 0.799
MDP0000871361 Malus domestica MDP0000871361 I 0.799
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.799
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.795
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.795
PK08602.1 Cannabis sativa PK08602.1 D 0.795
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.792
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.791
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.791
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.774
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.774
Bo8g092010 Brassica oleracea Bo8g092010 I 0.770
Bra007341 Brassica rapa Bra007341 I 0.770
Cla017778 Citrullus lanatus Cla017778 I 0.769
DREB2F Arabidopsis thaliana AT3G57600 D 0.767
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.767
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.767
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.767
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.767
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.766
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.762
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.761
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.761
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.756
Bo6g073020 Brassica oleracea Bo6g073020 I 0.753
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.753
Bo4g111040 Brassica oleracea Bo4g111040 I 0.752
Bra014617 Brassica rapa Bra014617 I 0.752
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.739
mgf017629m Mimulus guttatus mgf017629m I 0.705
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.701
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.701
Pm003634 Prunus mume Pm003634 I 0.699
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.698
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.698
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.698
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.696
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.692
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.689
Bo6g086320 Brassica oleracea Bo6g086320 I 0.688
Bra003752 Brassica rapa Bra003752 I 0.688
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.688
MDP0000250927 Malus domestica MDP0000250927 I 0.687
30170.m014115 Ricinus communis 30170.m014115 I 0.686
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.686
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.686
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.686
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.686
DREB2D Arabidopsis thaliana AT1G75490 D 0.684
Bo6g119660 Brassica oleracea Bo6g119660 I 0.684
Bra015840 Brassica rapa Bra015840 I 0.684
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.684
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.684
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.684
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.684
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.684
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.684
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.684
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.684
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.682
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.682
Cla012194 Citrullus lanatus Cla012194 I 0.682
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.682
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.681
OB01G13930 Oryza brachyantha OB01G13930 I 0.681
OBART01G04210 Oryza barthii OBART01G04210 I 0.681
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.681
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.681
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.681
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.681
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.681
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.681
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.681
DREB2A Oryza sativa OS01G0165000 I 0.681
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.681
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.681
PK07402.1 Cannabis sativa PK07402.1 D 0.680
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.678
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.678
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.678
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.678
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.678
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.678
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.677
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.677
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.677
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.677
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.677
Ca_10770 Cicer arietinum Ca_10770 I 0.677
Cla006713 Citrullus lanatus Cla006713 I 0.677
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.677
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.677
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.677