Lus10012210.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10012210.g T008784_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.807 0.940
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.767 0.880
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.683 0.760
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.678 0.740
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.678 0.740
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.678 0.740
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.677 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10012210 AP2 27 78

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.822
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.816
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.816
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.816
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.816
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.816
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.816
Ca_07264 Cicer arietinum Ca_07264 I 0.816
27810.m000639 Ricinus communis 27810.m000639 I 0.816
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.816
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.816
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.816
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.816
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.813
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.813
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.813
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.813
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.813
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.813
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.813
OBART03G05550 Oryza barthii OBART03G05550 I 0.813
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.813
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.813
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.813
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.813
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.813
DREB2E Oryza sativa OS03G0174400 I 0.813
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.813
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.813
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.813
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.813
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.810
Pm025865 Prunus mume Pm025865 I 0.810
MDP0000703626 Malus domestica MDP0000703626 I 0.810
MDP0000871361 Malus domestica MDP0000871361 I 0.810
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.807
TCM_024756 Theobroma cacao TCM_024756 I 0.807
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.807
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.807
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.807
PK08602.1 Cannabis sativa PK08602.1 D 0.807
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.806
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.806
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.804
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.803
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.801
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.793
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.780
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.780
Cla017778 Citrullus lanatus Cla017778 I 0.780
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.777
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.773
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.772
Bo8g092010 Brassica oleracea Bo8g092010 I 0.770
Bra007341 Brassica rapa Bra007341 I 0.770
DREB2F Arabidopsis thaliana AT3G57600 D 0.767
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.767
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.767
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.767
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.767
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.764
Bo6g073020 Brassica oleracea Bo6g073020 I 0.761
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.761
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.760
Bo4g111040 Brassica oleracea Bo4g111040 I 0.752
Bra014617 Brassica rapa Bra014617 I 0.752
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.744
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.711
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.711
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.706
mgf017629m Mimulus guttatus mgf017629m I 0.699
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.698
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.695
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.695
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.695
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.690
Pm003634 Prunus mume Pm003634 I 0.690
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.688
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.687
Cla012194 Citrullus lanatus Cla012194 I 0.685
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.684
OB01G13930 Oryza brachyantha OB01G13930 I 0.684
OBART01G04210 Oryza barthii OBART01G04210 I 0.684
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.684
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.684
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.684
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.684
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.684
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.684
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.684
DREB2A Oryza sativa OS01G0165000 I 0.684
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.683
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.683
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.683
PK07402.1 Cannabis sativa PK07402.1 D 0.683
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.683
Bo6g086320 Brassica oleracea Bo6g086320 I 0.682
Bra003752 Brassica rapa Bra003752 I 0.682
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.682
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.681
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.681
mgf024545m Mimulus guttatus mgf024545m I 0.681
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.681
MDP0000250927 Malus domestica MDP0000250927 I 0.681
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.680
Cla006713 Citrullus lanatus Cla006713 I 0.680
30170.m014115 Ricinus communis 30170.m014115 I 0.680
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.680
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.680
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.680
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.680
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.679
DREB2D Arabidopsis thaliana AT1G75490 D 0.678
Bo6g119660 Brassica oleracea Bo6g119660 I 0.678
Bra015840 Brassica rapa Bra015840 I 0.678
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.678
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.678
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.678
Si002067m.g Setaria italica Si002067m.g I 0.678
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.678
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.678
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.678
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.678
DREB2G Arabidopsis thaliana AT5G18450 D 0.677
Bo9g155940 Brassica oleracea Bo9g155940 I 0.677
Bra002159 Brassica rapa Bra002159 I 0.677
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.677
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.677
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.677