Bra002159 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra002159 T000991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.807 1.000
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.724 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.724 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.724 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.704 0.796
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.695 0.796
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.682 0.776
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.680 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002159.1-P AP2 32 83

Links

Other AP2 family TFs
Other Brassica rapa TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2G Arabidopsis thaliana AT5G18450 D 0.807
Bo9g155940 Brassica oleracea Bo9g155940 I 0.807
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.807
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.807
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.807
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.800
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.800
Bo2g016490 Brassica oleracea Bo2g016490 I 0.788
Bra023674 Brassica rapa Bra023674 I 0.788
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.783
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.760
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.756
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.756
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.754
Pm003634 Prunus mume Pm003634 I 0.750
Bo3g013160 Brassica oleracea Bo3g013160 I 0.744
Bra006460 Brassica rapa Bra006460 I 0.744
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.737
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.737
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.735
mgf017629m Mimulus guttatus mgf017629m I 0.734
29680.m001737 Ricinus communis 29680.m001737 I 0.733
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.729
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.727
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.727
MDP0000250924 Malus domestica MDP0000250924 I 0.727
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.726
30170.m014115 Ricinus communis 30170.m014115 I 0.726
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.726
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.726
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.726
Bo2g083920 Brassica oleracea Bo2g083920 I 0.725
Bra008200 Brassica rapa Bra008200 I 0.725
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.725
DREB2D Arabidopsis thaliana AT1G75490 D 0.724
Bo6g119660 Brassica oleracea Bo6g119660 I 0.724
Bra015840 Brassica rapa Bra015840 I 0.724
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.724
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.724
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.724
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.724
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.724
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.724
Pm006274 Prunus mume Pm006274 I 0.723
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.723
mgf024545m Mimulus guttatus mgf024545m I 0.723
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.722
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.722
Cla021113 Citrullus lanatus Cla021113 I 0.722
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.722
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.722
Bo6g086320 Brassica oleracea Bo6g086320 I 0.721
Bra003752 Brassica rapa Bra003752 I 0.721
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.721
MDP0000141335 Malus domestica MDP0000141335 I 0.721
MDP0000295902 Malus domestica MDP0000295902 I 0.721
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.720
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.720
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.720
Ca_10770 Cicer arietinum Ca_10770 I 0.720
Cla006713 Citrullus lanatus Cla006713 I 0.720
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.720
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.719
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.718
TCM_026121 Theobroma cacao TCM_026121 I 0.717
TCM_034132 Theobroma cacao TCM_034132 I 0.717
MDP0000250927 Malus domestica MDP0000250927 I 0.717
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.714
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.713
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.713
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.713
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.712
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.711
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.711
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.711
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.710
29729.m002292 Ricinus communis 29729.m002292 I 0.707
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.707
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.706
PK07829.1 Cannabis sativa PK07829.1 I 0.706
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.705
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.704
PK07402.1 Cannabis sativa PK07402.1 D 0.704
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.702
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.699
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.699
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.698
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.698
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.698
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.697
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.696
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.696
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.696
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.696
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.695
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.695
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.695
PK08602.1 Cannabis sativa PK08602.1 D 0.695
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.694
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.694
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.693
Si002067m.g Setaria italica Si002067m.g I 0.692
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.691
Bo6g073020 Brassica oleracea Bo6g073020 I 0.690
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.690
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.689
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.689
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.689
MDP0000165880 Malus domestica MDP0000165880 I 0.689
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.688
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.688
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.687
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.687
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.686
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.686
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.686
OB08G30790 Oryza brachyantha OB08G30790 I 0.686
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.686
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.686
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.686
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.686
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.686
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.686
DREB2C Oryza sativa OS08G0565200 I 0.686
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.686
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.686
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.685
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.685
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.685
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.685
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.685
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.685
TCM_024756 Theobroma cacao TCM_024756 I 0.685
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.685
Ca_07264 Cicer arietinum Ca_07264 I 0.685
27810.m000639 Ricinus communis 27810.m000639 I 0.685
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.685
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.685
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.685
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.685
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.685
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.685
Cla022803 Citrullus lanatus Cla022803 I 0.684
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.684
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.683
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.683
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.683
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.683
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.682
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.682
F775_05774 Aegilops tauschii F775_05774 I 0.682
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.682
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.682
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.682
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.682
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.682
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.682
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.682
OBART03G05550 Oryza barthii OBART03G05550 I 0.682
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.682
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.682
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.682
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.682
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.682
DREB2E Oryza sativa OS03G0174400 I 0.682
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.682
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.682
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.682
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.682
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.682
Pm018989 Prunus mume Pm018989 I 0.682
MDP0000147009 Malus domestica MDP0000147009 I 0.682
MDP0000446783 Malus domestica MDP0000446783 I 0.682
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.682
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.682
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.681
AT2G40350 Arabidopsis thaliana AT2G40350 I 0.681
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.681
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.681
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.681
DREB2F Arabidopsis thaliana AT3G57600 D 0.680
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.680
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.680
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.680
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.680
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.680
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.680
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.679
OB01G13930 Oryza brachyantha OB01G13930 I 0.679
OBART01G04210 Oryza barthii OBART01G04210 I 0.679
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.679
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.679
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.679
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.679
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.679
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.679
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.679
DREB2A Oryza sativa OS01G0165000 I 0.679
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.679
Cla017778 Citrullus lanatus Cla017778 I 0.679
Pm025865 Prunus mume Pm025865 I 0.679
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.679
MDP0000703626 Malus domestica MDP0000703626 I 0.679
MDP0000871361 Malus domestica MDP0000871361 I 0.679
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.677
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.677
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.677
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.677
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.677