Ciclev10022244m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10022244m.g T008025_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.710 0.816
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.705 0.878
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.705 0.878
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.705 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10022244m AP2 39 90

Links

Other AP2 family TFs
Other Citrus clementina TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_026121 Theobroma cacao TCM_026121 I 0.752
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.745
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.745
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.743
Cla022803 Citrullus lanatus Cla022803 I 0.741
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.741
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.736
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.736
OB08G30790 Oryza brachyantha OB08G30790 I 0.736
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.736
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.736
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.736
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.736
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.736
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.736
DREB2C Oryza sativa OS08G0565200 I 0.736
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.733
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.731
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.726
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.721
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.721
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.715
Pm003634 Prunus mume Pm003634 I 0.711
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.711
DREB2G Arabidopsis thaliana AT5G18450 D 0.710
Bo9g155940 Brassica oleracea Bo9g155940 I 0.710
Bra002159 Brassica rapa Bra002159 I 0.710
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.710
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.710
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.710
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.710
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.710
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.710
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.710
F775_02345 Aegilops tauschii F775_02345 I 0.708
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.708
Si024059m.g Setaria italica Si024059m.g I 0.708
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.708
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.708
Pavir.J25464 Panicum virgatum Pavir.J25464 I 0.708
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.707
Bo2g083920 Brassica oleracea Bo2g083920 I 0.706
Bra008200 Brassica rapa Bra008200 I 0.706
MDP0000250924 Malus domestica MDP0000250924 I 0.706
DREB2D Arabidopsis thaliana AT1G75490 D 0.705
Bo6g119660 Brassica oleracea Bo6g119660 I 0.705
Bra015840 Brassica rapa Bra015840 I 0.705
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.705
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.705
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.705
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.705
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.705
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.705
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.705
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.705
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.703
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.703
MDP0000165880 Malus domestica MDP0000165880 I 0.703
Bo6g086320 Brassica oleracea Bo6g086320 I 0.702
Bra003752 Brassica rapa Bra003752 I 0.702
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.702
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.702
Pm006274 Prunus mume Pm006274 I 0.702
Pm018989 Prunus mume Pm018989 I 0.702
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.702
MDP0000147009 Malus domestica MDP0000147009 I 0.702
MDP0000446783 Malus domestica MDP0000446783 I 0.702
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.701
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.701
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.700
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.700
Cla021113 Citrullus lanatus Cla021113 I 0.700
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.699
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.699
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.699
Ca_10770 Cicer arietinum Ca_10770 I 0.699
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.699
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.699
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.699
30170.m014115 Ricinus communis 30170.m014115 I 0.698
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.698
mgf017629m Mimulus guttatus mgf017629m I 0.698
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.698
MDP0000141335 Malus domestica MDP0000141335 I 0.698
MDP0000250927 Malus domestica MDP0000250927 I 0.698
MDP0000295902 Malus domestica MDP0000295902 I 0.698
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.698
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.697
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.697
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.696
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.696
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.694
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.694
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.694
F775_01779 Aegilops tauschii F775_01779 I 0.693
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.692
TCM_034132 Theobroma cacao TCM_034132 I 0.691
mgf024545m Mimulus guttatus mgf024545m I 0.691
Bo2g016490 Brassica oleracea Bo2g016490 I 0.690
Bra023674 Brassica rapa Bra023674 I 0.690
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.688
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.686
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.683
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.682
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.682
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.681
TRIUR3_03342 Triticum urartu TRIUR3_03342 N 0.680
Bo3g013160 Brassica oleracea Bo3g013160 I 0.678
Bra006460 Brassica rapa Bra006460 I 0.678