Bra023674 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra023674 T001151_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.788 0.940
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.704 0.760
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.704 0.760
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.704 0.760
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.686 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.684 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023674.1-P AP2 32 83

Links

Other AP2 family TFs
Other Brassica rapa TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g016490 Brassica oleracea Bo2g016490 I 0.848
DREB2G Arabidopsis thaliana AT5G18450 D 0.788
Bo9g155940 Brassica oleracea Bo9g155940 I 0.788
Bra002159 Brassica rapa Bra002159 I 0.788
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.788
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.788
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.788
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.780
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.780
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.772
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.763
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.740
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.737
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.734
Pm003634 Prunus mume Pm003634 I 0.730
Bo3g013160 Brassica oleracea Bo3g013160 I 0.724
Bra006460 Brassica rapa Bra006460 I 0.724
PK07829.1 Cannabis sativa PK07829.1 I 0.722
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.719
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.717
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.717
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.715
29680.m001737 Ricinus communis 29680.m001737 I 0.714
mgf017629m Mimulus guttatus mgf017629m I 0.714
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.713
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.709
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.707
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.707
MDP0000250924 Malus domestica MDP0000250924 I 0.707
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.706
30170.m014115 Ricinus communis 30170.m014115 I 0.706
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.706
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.706
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.706
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.706
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.706
Bo2g083920 Brassica oleracea Bo2g083920 I 0.705
Bra008200 Brassica rapa Bra008200 I 0.705
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.705
DREB2D Arabidopsis thaliana AT1G75490 D 0.704
Bo6g119660 Brassica oleracea Bo6g119660 I 0.704
Bra015840 Brassica rapa Bra015840 I 0.704
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.704
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.704
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.704
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.704
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.704
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.704
Pm006274 Prunus mume Pm006274 I 0.703
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.703
mgf024545m Mimulus guttatus mgf024545m I 0.703
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.702
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.702
Cla021113 Citrullus lanatus Cla021113 I 0.702
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.702
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.702
Bo6g086320 Brassica oleracea Bo6g086320 I 0.701
Bra003752 Brassica rapa Bra003752 I 0.701
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.701
MDP0000141335 Malus domestica MDP0000141335 I 0.701
MDP0000295902 Malus domestica MDP0000295902 I 0.701
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I 0.701
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.700
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.700
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.700
Ca_10770 Cicer arietinum Ca_10770 I 0.700
Cla006713 Citrullus lanatus Cla006713 I 0.700
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.700
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.699
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.699
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.698
TCM_026121 Theobroma cacao TCM_026121 I 0.698
TCM_034132 Theobroma cacao TCM_034132 I 0.697
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.697
MDP0000250927 Malus domestica MDP0000250927 I 0.697
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.696
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.695
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.693
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.693
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.693
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.692
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.691
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.691
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.690
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.690
29729.m002292 Ricinus communis 29729.m002292 I 0.688
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.687
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.687
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.687
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.686
PK08602.1 Cannabis sativa PK08602.1 D 0.686
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.685
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.684
PK07402.1 Cannabis sativa PK07402.1 D 0.684
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.682
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.682
Bo6g073020 Brassica oleracea Bo6g073020 I 0.681
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.680
Lus10002855.g Linum usitatissimum Lus10002855.g N 0.680
TCM_043302 Theobroma cacao TCM_043302 I 0.679
TCM_043306 Theobroma cacao TCM_043306 I 0.679
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.679
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.678
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.678
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.678
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.677
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.677