Gorai.009G197800 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.009G197800 T008651_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.775 0.918
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.775 0.918
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.775 0.918
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.727 0.837
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.685 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G197800.1 AP2 39 90

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.807
Pm006274 Prunus mume Pm006274 I 0.803
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.803
30170.m014115 Ricinus communis 30170.m014115 I 0.802
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.802
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.802
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.802
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.800
Cla021113 Citrullus lanatus Cla021113 I 0.800
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.799
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.798
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.797
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.794
TCM_034132 Theobroma cacao TCM_034132 I 0.793
mgf024545m Mimulus guttatus mgf024545m I 0.791
MDP0000250924 Malus domestica MDP0000250924 I 0.791
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.790
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.790
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.790
Ca_10770 Cicer arietinum Ca_10770 I 0.790
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.790
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.789
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.787
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.785
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.782
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.782
Bo2g083920 Brassica oleracea Bo2g083920 I 0.781
Bra008200 Brassica rapa Bra008200 I 0.781
MDP0000141335 Malus domestica MDP0000141335 I 0.777
MDP0000295902 Malus domestica MDP0000295902 I 0.777
DREB2D Arabidopsis thaliana AT1G75490 D 0.775
Bo6g119660 Brassica oleracea Bo6g119660 I 0.775
Bra015840 Brassica rapa Bra015840 I 0.775
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.775
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.775
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.775
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.775
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.775
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.770
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.765
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.765
Bo6g086320 Brassica oleracea Bo6g086320 I 0.762
Bra003752 Brassica rapa Bra003752 I 0.762
MDP0000250927 Malus domestica MDP0000250927 I 0.759
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.757
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.750
Cla022803 Citrullus lanatus Cla022803 I 0.749
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.749
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.746
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.744
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.736
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.736
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.733
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.733
Pm003634 Prunus mume Pm003634 I 0.729
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.729
DREB2G Arabidopsis thaliana AT5G18450 D 0.727
Bo9g155940 Brassica oleracea Bo9g155940 I 0.727
Bra002159 Brassica rapa Bra002159 I 0.727
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.727
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.727
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.727
29680.m001737 Ricinus communis 29680.m001737 I 0.726
mgf017629m Mimulus guttatus mgf017629m I 0.725
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.722
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.721
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.720
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.719
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.719
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.710
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.710
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.708
MDP0000223609 Malus domestica MDP0000223609 I 0.708
Bo2g016490 Brassica oleracea Bo2g016490 I 0.707
Bra023674 Brassica rapa Bra023674 I 0.707
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.707
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.707
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.707
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.703
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.702
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.700
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.699
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.699
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.699
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.699
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.697
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.697
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.697
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.694
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.694
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.693
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.693
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.693
TCM_026121 Theobroma cacao TCM_026121 I 0.692
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.692
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.691
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.691
Cla006713 Citrullus lanatus Cla006713 I 0.691
29729.m002292 Ricinus communis 29729.m002292 I 0.691
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.690
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.688
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.688
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.686
PK07402.1 Cannabis sativa PK07402.1 D 0.685
Bo3g013160 Brassica oleracea Bo3g013160 I 0.684
Bra006460 Brassica rapa Bra006460 I 0.684
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.684
MDP0000153866 Malus domestica MDP0000153866 I 0.684
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.684
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.683
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.681
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.681
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.678
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.678
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.677
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.677
MDP0000293996 Malus domestica MDP0000293996 N 0.677