Cagra.0799s0022 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0799s0022 T007714_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.803 1.000
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.803 1.000
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.803 1.000
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.724 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.700 0.837
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0799s0022.1.p AP2 40 91

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.803
Bo6g119660 Brassica oleracea Bo6g119660 I 0.803
Bra015840 Brassica rapa Bra015840 I 0.803
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.803
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.803
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.803
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.803
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.796
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.796
Bo2g083920 Brassica oleracea Bo2g083920 I 0.795
Bra008200 Brassica rapa Bra008200 I 0.795
Bo6g086320 Brassica oleracea Bo6g086320 I 0.790
Bra003752 Brassica rapa Bra003752 I 0.790
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.786
30170.m014115 Ricinus communis 30170.m014115 I 0.784
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.784
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.784
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.784
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.783
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.782
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.780
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.780
Cla021113 Citrullus lanatus Cla021113 I 0.778
Pm006274 Prunus mume Pm006274 I 0.778
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.778
mgf024545m Mimulus guttatus mgf024545m I 0.776
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.775
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.775
MDP0000250924 Malus domestica MDP0000250924 I 0.774
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.773
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.770
TCM_034132 Theobroma cacao TCM_034132 I 0.770
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.769
MDP0000141335 Malus domestica MDP0000141335 I 0.768
MDP0000295902 Malus domestica MDP0000295902 I 0.768
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.765
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.765
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.765
Ca_10770 Cicer arietinum Ca_10770 I 0.765
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.765
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.759
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.753
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.753
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.750
MDP0000250927 Malus domestica MDP0000250927 I 0.746
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.741
mgf017629m Mimulus guttatus mgf017629m I 0.738
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.737
Cla022803 Citrullus lanatus Cla022803 I 0.737
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.737
Pm003634 Prunus mume Pm003634 I 0.734
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.732
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.731
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.731
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.726
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.726
DREB2G Arabidopsis thaliana AT5G18450 D 0.724
Bo9g155940 Brassica oleracea Bo9g155940 I 0.724
Bra002159 Brassica rapa Bra002159 I 0.724
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.724
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.724
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.724
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.723
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.723
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.720
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.720
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.719
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.719
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.715
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.713
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.712
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.709
TCM_026121 Theobroma cacao TCM_026121 I 0.707
29680.m001737 Ricinus communis 29680.m001737 I 0.706
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.706
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.706
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.705
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.705
Bo2g016490 Brassica oleracea Bo2g016490 I 0.704
Bra023674 Brassica rapa Bra023674 I 0.704
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.704
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.702
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.702
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.702
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.700
PK07402.1 Cannabis sativa PK07402.1 D 0.700
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.698
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.696
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.696
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.695
Cla006713 Citrullus lanatus Cla006713 I 0.695
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.694
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.694
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.693
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.693
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.693
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.693
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.693
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.693
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.692
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.692
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.692
MDP0000223609 Malus domestica MDP0000223609 I 0.691
Bo3g013160 Brassica oleracea Bo3g013160 I 0.690
Bra006460 Brassica rapa Bra006460 I 0.690
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.690
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.690
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.687
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.687
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.687
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.686
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.686
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.685
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.684
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.683
PK08602.1 Cannabis sativa PK08602.1 D 0.683
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.682
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.682
OB08G30790 Oryza brachyantha OB08G30790 I 0.682
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.682
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.682
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.682
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.682
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.682
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.682
DREB2C Oryza sativa OS08G0565200 I 0.682
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.680
29729.m002292 Ricinus communis 29729.m002292 I 0.680
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.680
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.679
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.679
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.679
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.679
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.679
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.679
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.679
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.679
OBART03G05550 Oryza barthii OBART03G05550 I 0.679
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.679
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.679
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.679
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.679
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.679
DREB2E Oryza sativa OS03G0174400 I 0.679
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.679
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.679
MDP0000153866 Malus domestica MDP0000153866 I 0.679
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.679
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.679
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.678
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.678
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.678
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.678
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.678
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.678
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.678
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.678
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.677