Bra003752 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra003752 T001002_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.790 0.980
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.790 0.980
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.790 0.980
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.721 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.700 0.837
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003752.1-P AP2 40 91

Links

Other AP2 family TFs
Other Brassica rapa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g086320 Brassica oleracea Bo6g086320 I 0.800
DREB2D Arabidopsis thaliana AT1G75490 D 0.790
Bo6g119660 Brassica oleracea Bo6g119660 I 0.790
Bra015840 Brassica rapa Bra015840 I 0.790
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.790
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.790
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.790
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.790
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.790
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.783
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.783
Bo2g083920 Brassica oleracea Bo2g083920 I 0.781
Bra008200 Brassica rapa Bra008200 I 0.781
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.775
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.775
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.775
Ca_10770 Cicer arietinum Ca_10770 I 0.775
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.775
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.773
30170.m014115 Ricinus communis 30170.m014115 I 0.771
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.771
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.771
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.771
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.769
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.769
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.767
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.767
Cla021113 Citrullus lanatus Cla021113 I 0.765
Pm006274 Prunus mume Pm006274 I 0.765
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.765
mgf024545m Mimulus guttatus mgf024545m I 0.763
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.762
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.762
MDP0000250924 Malus domestica MDP0000250924 I 0.761
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.760
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.757
TCM_034132 Theobroma cacao TCM_034132 I 0.756
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.756
MDP0000141335 Malus domestica MDP0000141335 I 0.754
MDP0000295902 Malus domestica MDP0000295902 I 0.754
MDP0000250927 Malus domestica MDP0000250927 I 0.749
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.746
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.746
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.741
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.740
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.740
mgf017629m Mimulus guttatus mgf017629m I 0.738
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.734
Pm003634 Prunus mume Pm003634 I 0.731
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.727
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.727
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.727
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.726
Cla022803 Citrullus lanatus Cla022803 I 0.724
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.724
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.723
DREB2G Arabidopsis thaliana AT5G18450 D 0.721
Bo9g155940 Brassica oleracea Bo9g155940 I 0.721
Bra002159 Brassica rapa Bra002159 I 0.721
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.721
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.721
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.721
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.720
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.720
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.716
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.716
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.715
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.714
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.713
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.712
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.707
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.707
TCM_026121 Theobroma cacao TCM_026121 I 0.707
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.706
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.706
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.706
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.702
29680.m001737 Ricinus communis 29680.m001737 I 0.702
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.702
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.702
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.702
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.702
Bo2g016490 Brassica oleracea Bo2g016490 I 0.701
Bra023674 Brassica rapa Bra023674 I 0.701
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.700
PK07402.1 Cannabis sativa PK07402.1 D 0.700
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.698
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.696
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.696
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.696
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.696
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.696
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.695
Cla006713 Citrullus lanatus Cla006713 I 0.695
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.694
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.694
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.693
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.693
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.693
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.693
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.690
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.690
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.689
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.688
Bo3g013160 Brassica oleracea Bo3g013160 I 0.687
Bra006460 Brassica rapa Bra006460 I 0.687
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.686
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.685
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.684
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.684
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.683
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.683
PK08602.1 Cannabis sativa PK08602.1 D 0.683
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.682
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.682
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.682
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.682
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.682
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.682
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.682
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.682
OBART03G05550 Oryza barthii OBART03G05550 I 0.682
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.682
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.682
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.682
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.682
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.682
DREB2E Oryza sativa OS03G0174400 I 0.682
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.682
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.682
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.682
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.682
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.682
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.682
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.681
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.681
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.680
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.680
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.680
29729.m002292 Ricinus communis 29729.m002292 I 0.680
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.680
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.679
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.679
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.679
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.679
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.679
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.679
TCM_024756 Theobroma cacao TCM_024756 I 0.679
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.679
Ca_07264 Cicer arietinum Ca_07264 I 0.679
Pm025865 Prunus mume Pm025865 I 0.679
27810.m000639 Ricinus communis 27810.m000639 I 0.679
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.679
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.679
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.679
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.679
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.679
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.679
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.679
MDP0000153866 Malus domestica MDP0000153866 I 0.679
MDP0000703626 Malus domestica MDP0000703626 I 0.679
MDP0000871361 Malus domestica MDP0000871361 I 0.679
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.679
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.679
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.678
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.678
OB08G30790 Oryza brachyantha OB08G30790 I 0.678
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.678
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.678
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.678
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.678
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.678
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.678
DREB2C Oryza sativa OS08G0565200 I 0.678
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.678
MDP0000223609 Malus domestica MDP0000223609 I 0.678
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.678
PK07829.1 Cannabis sativa PK07829.1 I 0.678