cassava15495.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava15495.m1 T006808_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.815 0.980
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.765 0.900
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.685 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.681 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15495.m1 AP2 23 74

Links

Other AP2 family TFs
Other Manihot esculenta TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.825
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.825
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.825
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.825
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.825
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.825
Ca_07264 Cicer arietinum Ca_07264 I 0.825
27810.m000639 Ricinus communis 27810.m000639 I 0.825
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.825
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.825
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.825
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.821
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.821
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.821
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.821
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.821
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.821
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.821
OBART03G05550 Oryza barthii OBART03G05550 I 0.821
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.821
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.821
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.821
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.821
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.821
DREB2E Oryza sativa OS03G0174400 I 0.821
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.821
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.821
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.818
Pm025865 Prunus mume Pm025865 I 0.818
MDP0000703626 Malus domestica MDP0000703626 I 0.818
MDP0000871361 Malus domestica MDP0000871361 I 0.818
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.816
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.816
TCM_024756 Theobroma cacao TCM_024756 I 0.815
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.815
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.815
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.815
PK08602.1 Cannabis sativa PK08602.1 D 0.815
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.814
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.811
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.811
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.809
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.807
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.805
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.802
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.801
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.800
Cla017778 Citrullus lanatus Cla017778 I 0.789
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.785
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.781
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.781
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.774
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.774
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.772
Bo6g073020 Brassica oleracea Bo6g073020 I 0.769
Bo8g092010 Brassica oleracea Bo8g092010 I 0.768
Bra007341 Brassica rapa Bra007341 I 0.768
DREB2F Arabidopsis thaliana AT3G57600 D 0.765
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.765
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.765
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.765
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.765
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.759
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.758
Bo4g111040 Brassica oleracea Bo4g111040 I 0.750
Bra014617 Brassica rapa Bra014617 I 0.750
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.748
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.705
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.705
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.704
mgf017629m Mimulus guttatus mgf017629m I 0.697
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.695
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.695
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.692
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.689
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.688
Pm003634 Prunus mume Pm003634 I 0.688
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.686
DREB2G Arabidopsis thaliana AT5G18450 D 0.685
Bo9g155940 Brassica oleracea Bo9g155940 I 0.685
Bra002159 Brassica rapa Bra002159 I 0.685
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.685
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.685
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.685
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.684
OB01G13930 Oryza brachyantha OB01G13930 I 0.684
OBART01G04210 Oryza barthii OBART01G04210 I 0.684
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.684
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.684
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.684
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.684
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.684
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.684
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.684
DREB2A Oryza sativa OS01G0165000 I 0.684
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.683
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.683
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.681
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.681
PK07402.1 Cannabis sativa PK07402.1 D 0.681
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.680
Bo6g086320 Brassica oleracea Bo6g086320 I 0.679
Bra003752 Brassica rapa Bra003752 I 0.679
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
Cla012194 Citrullus lanatus Cla012194 I 0.679
MDP0000250927 Malus domestica MDP0000250927 I 0.679
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.678
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.678
30170.m014115 Ricinus communis 30170.m014115 I 0.678
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.678
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.678
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.678
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.678
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.678
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.678
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.677
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.677