POPTR_0012s13870 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0012s13870 T004709_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.807 0.960
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.807 0.960
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.804 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.804 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.804 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.804 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.768 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.768 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.768 0.880
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.746 0.840
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.746 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.732 0.800
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.732 0.800
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.732 0.800
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.732 0.800
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.732 0.800
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.732 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.704 0.760
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.702 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.702 0.900
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.696 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.683 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.683 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s13870.1 AP2 85 136

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RBPJ Homo sapiens ENSG00000168214 D 0.000
M378DRAFT_115389 Amanita muscaria M378DRAFT_115389 N 0.000
fgenesh1_pg.C_scaffold_11000203 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000203 N 0.000
SERLA73DRAFT_174218 Serpula lacrymans SERLA73DRAFT_174218 N 0.000
SCLCIDRAFT_110688 Scleroderma citrinum SCLCIDRAFT_110688 N 0.000
SCHCODRAFT_13378 Schizophyllum commune SCHCODRAFT_13378 N 0.000
PLEOSDRAFT_1054066 Pleurotus ostreatus PLEOSDRAFT_1054066 N 0.000
PISMIDRAFT_646612 Pisolithus microcarpus PISMIDRAFT_646612 N 0.000
PHLGIDRAFT_17608 Phlebiopsis gigantea PHLGIDRAFT_17608 N 0.000
PHACADRAFT_190379 Phanerochaete carnosa PHACADRAFT_190379 N 0.000
PAXRUDRAFT_23347 Paxillus rubicundulus PAXRUDRAFT_23347 N 0.000
MPER_06363 Moniliophthora perniciosa MPER_06363 N 0.000
Moror_914 Moniliophthora roreri Moror_914 N 0.000
M413DRAFT_22486 Hebeloma cylindrosporum M413DRAFT_22486 N 0.000
M404DRAFT_134267 Pisolithus tinctorius M404DRAFT_134267 N 0.000
AGABI2DRAFT_114358 Agaricus bisporus AGABI2DRAFT_114358 N 0.000
LACBIDRAFT_300968 Laccaria bicolor LACBIDRAFT_300968 N 0.000
K443DRAFT_673333 Laccaria amethystina K443DRAFT_673333 N 0.000
JAAARDRAFT_119629 Jaapia argillacea JAAARDRAFT_119629 N 0.000
GLOTRDRAFT_52937 Gloeophyllum trabeum GLOTRDRAFT_52937 N 0.000
GALMADRAFT_83961 Galerina marginata GALMADRAFT_83961 N 0.000
FOMPIDRAFT_1141437 Fomitopsis pinicola FOMPIDRAFT_1141437 N 0.000
FIBRA_00291 Fibroporia radiculosa FIBRA_00291 N 0.000
CY34DRAFT_22011 Suillus luteus CY34DRAFT_22011 N 0.000
CERSUDRAFT_110536 Ceriporiopsis subvermispora CERSUDRAFT_110536 N 0.000
CC1G_13688 Coprinopsis cinerea CC1G_13688 N 0.000
BOTBODRAFT_37170 Botryobasidium botryosum BOTBODRAFT_37170 N 0.000