scaffold_801641.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_801641.1 T005118_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF025
M06680_2.00 		Arabidopsis thaliana
NNNYYGCCGACANHN
NDNTGTCGGCRRNNN		 Dap-seq
OMalley et al.(2016)
Rap210_col_a 		0.748 0.980
ERF025
M06681_2.00 		Arabidopsis thaliana
NNNYNRCCGACANN
NNTGTCGGYNRNNN		 Dap-seq
OMalley et al.(2016)
Rap210_colamp_a 		0.748 0.980
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_801641.1 AP2 63 113

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF025 Arabidopsis thaliana AT5G52020 D 0.748
Bo2g048150 Brassica oleracea Bo2g048150 I 0.742
Bo3g023490 Brassica oleracea Bo3g023490 I 0.724
Bo9g104780 Brassica oleracea Bo9g104780 I 0.737
Bra022573 Brassica rapa Bra022573 I 0.731
Bra028291 Brassica rapa Bra028291 I 0.736
Bra029147 Brassica rapa Bra029147 I 0.724
Bostr.15774s0348 Boechera stricta Bostr.15774s0348 I 0.743
Carubv10027037m.g Capsella rubella Carubv10027037m.g I 0.743
MDP0000262710 Malus domestica MDP0000262710 I 0.685
Thhalv10014566m.g Eutrema salsugineum Thhalv10014566m.g I 0.727