Thhalv10014566m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10014566m.g T009934_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF025
M06680_2.00 		Arabidopsis thaliana
NNNYYGCCGACANHN
NDNTGTCGGCRRNNN		 Dap-seq
OMalley et al.(2016)
Rap210_col_a 		0.730 0.959
ERF025
M06681_2.00 		Arabidopsis thaliana
NNNYNRCCGACANN
NNTGTCGGYNRNNN		 Dap-seq
OMalley et al.(2016)
Rap210_colamp_a 		0.730 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10014566m AP2 66 116

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g023490 Brassica oleracea Bo3g023490 I 0.751
Bra029147 Brassica rapa Bra029147 I 0.751
Bra028291 Brassica rapa Bra028291 I 0.749
Bostr.15774s0348 Boechera stricta Bostr.15774s0348 I 0.733
Carubv10027037m.g Capsella rubella Carubv10027037m.g I 0.733
ERF025 Arabidopsis thaliana AT5G52020 D 0.730
Bo2g048150 Brassica oleracea Bo2g048150 I 0.730
Bo9g104780 Brassica oleracea Bo9g104780 I 0.729
scaffold_801641.1 Arabidopsis lyrata scaffold_801641.1 I 0.727
Bra022573 Brassica rapa Bra022573 I 0.719