CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava16948.m1 *(Manihot esculenta)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	cassava16948.m1	T006816_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.812	0.940
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.806	0.820
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.799	0.800
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.779	0.860
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.779	0.860
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.779	0.860
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.768	0.760
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.768	0.760
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.759	0.900
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.759	0.900
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.757	0.760
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.757	0.760
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.757	0.760
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.746	0.740
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.737	0.720
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.737	0.720
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.737	0.720
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.726	0.760
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.722	0.720
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.722	0.720
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.722	0.720
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.718	0.720
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.710	0.700
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.710	0.720
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.710	0.720
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.709	0.740
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.709	0.740
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.709	0.740
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.706	0.700
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.706	0.700
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.706	0.700
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.706	0.720
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.705	0.780
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.705	0.780
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.705	0.780
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.705	0.780
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.703	0.720
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.700	0.700
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.696	0.680
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.695	0.720
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.690	0.700
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.690	0.700
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.689	0.660
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.689	0.660
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.687	0.640
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.683	0.640
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.681	0.720
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.679	0.680
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.679	0.680
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.679	0.680
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.677	0.680
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
cassava16948.m1	AP2	5	56	RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGT

Links
Other AP2 family TFs
Other *Manihot esculenta* TFs

1490 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Otx2	Mus musculus	ENSMUSG00000021848	D
pitx1	Gasterosteus aculeatus	ENSGACG00000016483	I
Cmyd_10017639	Chelonia mydas	Cmyd_10017639	I
unc-30	Caenorhabditis elegans	WBGene00006766	I
Hsal_07660--XP_394161.1_APIME	Harpegnathos saltator	Hsal_07660--XP_394161.1_APIME	I
Ocbimv22035611m.g	Octopus bimaculoides	Ocbimv22035611m.g	I
HMEL015659	Heliconius melpomene	HMEL015659	I
OTX2	Myotis lucifugus	ENSMLUG00000022591	I
TPRX1	Homo sapiens	ENSG00000178928	I
ENSCSAG00000014537	Chlorocebus sabaeus	ENSCSAG00000014537	I
OTX2	Choloepus hoffmanni	ENSCHOG00000013827	I
AALB006874	Anopheles albimanus	AALB006874	N
TTRE_0000079401	Trichuris trichiura	TTRE_0000079401	N
TELCIR_18721	Teladorsagia circumcincta	TELCIR_18721	N
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1	Meloidogyne floridensis	snap_masked-nMf.1.1.scaf19847-processed-gene-0.1	N
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2	Meloidogyne floridensis	snap_masked-nMf.1.1.scaf16485-processed-gene-0.2	N
SMTD_0001972301	Schistosoma mattheei	SMTD_0001972301	N
CLEC006124	Cimex lectularius	CLEC006124	N
LDEC016519	Leptinotarsa decemlineata	LDEC016519	N
Sjc_0128760	Schistosoma japonicum	Sjc_0128760	N
XP_002164986.1	Hydra magnipapillata	XP_002164986.1	N
ANCCEY_04348	Ancylostoma ceylanicum	ANCCEY_04348	N
OESDEN_16215	Oesophagostomum dentatum	OESDEN_16215	N
AEPI010431	Anopheles epiroticus	AEPI010431	N
GPLIN_000181000	Globodera pallida	GPLIN_000181000	N
ASIS015315	Anopheles sinensis	ASIS015315	N
ISCW006446	Ixodes scapularis	ISCW006446	N
ANCCAN_27245	Ancylostoma caninum	ANCCAN_27245	N
ANCCEY_11895	Ancylostoma ceylanicum	ANCCEY_11895	N
ENSLAFG00000000420	Loxodonta africana	ENSLAFG00000000420	N
WUBG_02624	Wuchereria bancrofti	WUBG_02624	N
ACEP26305	Atta cephalotes	ACEP26305	N
CBG15039	Caenorhabditis briggsae	CBG15039	N
CGI_10007832	Crassostrea gigas	CGI_10007832	N
CJA11256	Caenorhabditis japonica	CJA11256	N
EFV55958	Trichinella spiralis	EFV55958	N
DPRX	Choloepus hoffmanni	ENSCHOG00000010851	N
ENSCJAG00000011381	Callithrix jacchus	ENSCJAG00000011381	N
ENSCSAG00000003788	Chlorocebus sabaeus	ENSCSAG00000003788	N
LEUTX	Homo sapiens	ENSG00000213921	N
Alligator_sinensis_CCG004399.1	Alligator sinensis	Alligator_sinensis_CCG004399.1	N
DMBX1	Monodelphis domestica	ENSMODG00000001963	N
ENSPANG00000010570	Papio anubis	ENSPANG00000010570	N
LEUTX	Pan troglodytes	ENSPTRG00000033892	N
ENSSTOG00000026735	Ictidomys tridecemlineatus	ENSSTOG00000026735	N
GK22279	Drosophila willistoni	FBgn0224264	N
GB50469	Apis mellifera	GB50469	N
WUBG_02192	Wuchereria bancrofti	WUBG_02192	N
NEMVEDRAFT_v1g48861	Nematostella vectensis	NEMVEDRAFT_v1g48861	N
YQE_12574	Dendroctonus ponderosae	YQE_12574	N

cassava16948.m1 (Manihot esculenta) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1490 Related TFs

cassava16948.m1 **(Manihot esculenta)
AP2**