Cmyd_10017639 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10017639 T225786_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PITX2
M00313_2.00 		Homo sapiens
NWAAKHYN
NRDMTTWN		 PBM
Barrera et al.(2016)
PITX2_REF 		0.471 1.000
Pitx3
M00428_2.00 		Mus musculus
NTAAKCYN
NRGMTTAN		 PBM
Berger et al.(2008)
Pitx3_3497 		0.471 1.000
Pitx2
M00440_2.00 		Mus musculus
NTAATCCN
NGGATTAN		 PBM
Berger et al.(2008)
Pitx2_2274 		0.471 1.000
PITX3
M03111_2.00 		Homo sapiens
NHTAATCCN
NGGATTADN		 SELEX
Jolma et al.(2013)
PITX3_1 		0.471 1.000
PITX2
M05229_2.00 		Homo sapiens
NTAAKCCN
NGGMTTAN		 SELEX
Yin et al.(2017)
PITX2_eDBD_HT-SELEX 		0.471 1.000
PITX2
M05231_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX2_FL_HT-SELEX 		0.471 1.000
PITX3
M04997_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX3_eDBD_HT-SELEX 		0.471 1.000
PITX2
M10720_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX2_Q2 		0.471 1.000
PITX2
M10721_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX2_Q4 		0.471 1.000
PITX2
M10722_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX2_Q6 		0.471 1.000
PITX3
M10660_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX3_Q2 		0.471 1.000
PITX3
M10661_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX3_Q3_01 		0.471 1.000
PITX3
M10662_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX3_Q3 		0.471 1.000
PITX2
M00310_2.00 		Homo sapiens
HTAATCYN
NRGATTAD		 PBM
Barrera et al.(2016)
PITX2_L100Q 		0.471 1.000
PITX2
M00311_2.00 		Homo sapiens
TTAATCCY
RGGATTAA		 PBM
Barrera et al.(2016)
PITX2_R108H 		0.471 1.000
PITX2
M00314_2.00 		Homo sapiens
NTAATMYN
NRKATTAN		 PBM
Barrera et al.(2016)
PITX2_T114P 		0.471 1.000
PITX2
M05230_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
PITX2_eDBD_Methyl-HT-SELEX 		0.471 1.000
PITX2
M05232_2.00 		Homo sapiens
YTAATCCY
RGGATTAR		 SELEX
Yin et al.(2017)
PITX2_FL_Methyl-HT-SELEX 		0.471 1.000
PITX3
M04998_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX3_eDBD_Methyl-HT-SELEX 		0.471 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017639 Homeodomain 1 31

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
pitx1 Gasterosteus aculeatus ENSGACG00000016483 I 0.866
TTRE_0000079401 Trichuris trichiura TTRE_0000079401 N 0.865
TELCIR_18721 Teladorsagia circumcincta TELCIR_18721 N 0.859
ANCCEY_04348 Ancylostoma ceylanicum ANCCEY_04348 N 0.859
unc-30 Caenorhabditis elegans WBGene00006766 I 0.859
XP_002164986.1 Hydra magnipapillata XP_002164986.1 N 0.841
CGI_10007832 Crassostrea gigas CGI_10007832 N 0.799
AALB006874 Anopheles albimanus AALB006874 N 0.790
Ocbimv22035611m.g Octopus bimaculoides Ocbimv22035611m.g I 0.789
DMBX1 Monodelphis domestica ENSMODG00000001963 N 0.774
CJA11256 Caenorhabditis japonica CJA11256 N 0.770
ASIS015315 Anopheles sinensis ASIS015315 N 0.769
Otx2 Mus musculus ENSMUSG00000021848 D 0.763
HMEL015659 Heliconius melpomene HMEL015659 I 0.763
Hsal_07660--XP_394161.1_APIME Harpegnathos saltator Hsal_07660--XP_394161.1_APIME I 0.763
Alligator_sinensis_CCG004399.1 Alligator sinensis Alligator_sinensis_CCG004399.1 N 0.763
ENSCSAG00000014537 Chlorocebus sabaeus ENSCSAG00000014537 I 0.763
OESDEN_16215 Oesophagostomum dentatum OESDEN_16215 N 0.761
ENSLAFG00000000420 Loxodonta africana ENSLAFG00000000420 N 0.760
CBG15039 Caenorhabditis briggsae CBG15039 N 0.757
OTX2 Choloepus hoffmanni ENSCHOG00000013827 I 0.755
ENSCJAG00000011381 Callithrix jacchus ENSCJAG00000011381 N 0.753
TPRX1 Homo sapiens ENSG00000178928 I 0.752
ENSSTOG00000026735 Ictidomys tridecemlineatus ENSSTOG00000026735 N 0.752
GPLIN_000181000 Globodera pallida GPLIN_000181000 N 0.749
WUBG_02192 Wuchereria bancrofti WUBG_02192 N 0.749
ISCW006446 Ixodes scapularis ISCW006446 N 0.749
CLEC006124 Cimex lectularius CLEC006124 N 0.749
ACEP26305 Atta cephalotes ACEP26305 N 0.749
AEPI010431 Anopheles epiroticus AEPI010431 N 0.749
Sjc_0128760 Schistosoma japonicum Sjc_0128760 N 0.749
LDEC016519 Leptinotarsa decemlineata LDEC016519 N 0.749
YQE_12574 Dendroctonus ponderosae YQE_12574 N 0.749
SMTD_0001972301 Schistosoma mattheei SMTD_0001972301 N 0.736
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 N 0.733
EFV55958 Trichinella spiralis EFV55958 N 0.733
GB50469 Apis mellifera GB50469 N 0.731
ENSPANG00000010570 Papio anubis ENSPANG00000010570 N 0.731
DPRX Choloepus hoffmanni ENSCHOG00000010851 N 0.724
LDEC023625 Leptinotarsa decemlineata LDEC023625 N 0.710
LEUTX Homo sapiens ENSG00000213921 N 0.709
LEUTX Pan troglodytes ENSPTRG00000033892 N 0.709
ENSCSAG00000003788 Chlorocebus sabaeus ENSCSAG00000003788 N 0.709
GK22279 Drosophila willistoni FBgn0224264 N 0.697
ANCCEY_11895 Ancylostoma ceylanicum ANCCEY_11895 N 0.696
WUBG_02624 Wuchereria bancrofti WUBG_02624 N 0.683
OTX2 Myotis lucifugus ENSMLUG00000022591 I 0.680
NEMVEDRAFT_v1g48861 Nematostella vectensis NEMVEDRAFT_v1g48861 N 0.678
LEUTX Felis catus ENSFCAG00000023272 N 0.664
LEUTX Canis familiaris ENSCAFG00000028552 N 0.664
ENSTTRG00000007283 Tursiops truncatus ENSTTRG00000007283 N 0.658
ENSSSCG00000002985 Sus scrofa ENSSSCG00000002985 N 0.658
ENSPVAG00000005359 Pteropus vampyrus ENSPVAG00000005359 N 0.658
Hba_17538 Heterorhabditis bacteriophora Hba_17538 N 0.650
ENSOARG00000006291 Ovis aries ENSOARG00000006291 N 0.644
Traes_3AS_348CA06D5 Triticum aestivum Traes_3AS_348CA06D5 N 0.634
ENSOGAG00000034150 Otolemur garnettii ENSOGAG00000034150 N 0.619
LEUTX Bos taurus ENSBTAG00000046425 N 0.617
ANCCAN_27245 Ancylostoma caninum ANCCAN_27245 N 0.606
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 N 0.606
ENSMICG00000011824 Microcebus murinus ENSMICG00000011824 I 0.471